Gene detail

Detailed information of XP_066924749.1 in Clytia hemisphaerica

Genomic Location: NW_027104055.1:235767...264644
NR annotation: XP_047128419.1, sex comb on midleg-like protein 2 isoform X7 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066924749.1

ATGGCTGACAGTACGACAAAGAATGATTTGACTGAGCACCGAGAAGAGCTGCTAGAAGCTAGTGAAACTAGAGACACAATTGAAGAATCACATTCAGGTGAAGAAACTGACAGAGATAGACCCATCAATAGTTATGCTAGTATGATTTATTTCAAAGAGAAACCATCCAAACATTATTCCATCAAAGAGGAGCCTTCATCACCAGAAGATGAATGGAAACCATTGGATGATGCAGCCGCTAAAAGCAAAGAATCCAAGAAGAACATTCAAAAACCAGATGAGATGCCAAACACAGCAATAGTGAATCCTCTTCGGTCAATGTCTTCTTCTGGGTCACCATTGTCTTACACCACCAACACCGAATCTGTTTCGAGAACTCAAAGCAAAGCTACGCATACACCGAAATCACCAAGCACAACAGGACTTCCACAAAAACCTTTGACACCTTACATGAGTTACAGAAATATGATATTTGAGGAGATCAAGCACAAATACCCTGGATGTTCACCTTATGATTTAGCTTGTTTGATTAGCAGTAAATGGAGCATGTTGACCGACTCTGAAAGAAAGGTATGGGAAGATCAATACGAAGTAGAAATGAGGAAGTATAACGAACGTATTGTGGTCAAACTACCTCTACCTAAATCTAATGCTACCAAAATCGATTGGAATACTGAGTCAGCAACAGAATCCTCAACCTCGCCTACGCAAATTGCTAAAACAGGAATCGTTGCCTCTACATCCACAACAGCTTCCAACACTACAACAGACGAAAACAAATCGTCACCACAAGTTGGTAACTGTAAACTTTGCCAACGTTGTACAACGTTACAAGACTTCTCTTCTGTTATTGATGGACATGAGATCTATTGCTCTGGACTGTGCTCTGAGAAATGTTACATGGAAGCTGCCAAACAGATTCATAATTTTGAAAGTGGAAGCACCTCTAAAGGGAGATATGGTCGTTCAAGTACATCACAAGAAAGCTCTTCTGCATCTTCGCACCTTTCAACGAGCAGTACATCGTCTTATTCTAATACAACTAATAATGCTCCTGATCTTATTCGACACTCTAAATCATCTTCTTTGTTTGATTGGGAACAGTATTTGAGCGTGGATCCACAAAGCTCAATTGCTCATTGGATGTTCTTTCGTCAGGCACGCAGTCCCCATGTTAATAGCTTTGTTGCTGGAATGAAACTAGAAGCGTGTAGCTACAACGCAAGCAACATGTCACCGACTTTTAGCCTAGCAACAGTTATTGCTACAGTGGGTAGTCGAATCTTGTTACATTTCGATGGTGCAGATCCTAGTTCGGATATTTGGAGGTTACCTGATTCAGGAGATATTCATCCGGTTGGGTGGACTGAAGGATCACTCTTAAAAGCACCGATGGGATACAAGTACGATCCTTCGAAATACAATAAATATTTTGCCACTAGTCTTCAGAGCGCTGAAATTGCTCCTGCCAGATTCTTTAAGAAAGAACCTAAGAAACCAATGGAGAATTATTTCACAGTTGGAATGAAGATGGAAGCGGTTGACAAAAGCAAACCGTCCTACATAGGAGTGGCAACGGTCGTCGATGTAGAAGGTGAACAGATCAAGATTGCATTTGATGGATACAAAGAACTTGGTTATTGGTGTCATTACTATGACCGCGATTTGTTTCCTGCTGGTTGGTGCGCTAGATCTGGTCATCCACTACGCCCACCAAGTAACAAAGTCAACCCAATTTATCAAAGAGAATCACGTTCGTCTCCTCCACCAAGCATGGCATCTATTGGACCAAAAAGTCCACTCATACAACCCACTCTGTTGCCATCGCAATCACAACCACAAGCGCCGCAACCACCACAATCACGTGATCAAGCACGTGATCATGCTACAAGTTCTTCCACCTCTTCATGGAAAGATAAGTCAGCATCTCCCAATAGTGTTGAAGTATTTCTCAACCTTGAATGTTACTGTGGCCCATACATCGAATTGAACAAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9VHA0	Polycomb protein Scm OS=Drosophila melanogaster OX=7227 GN=Scm PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02820	MBT	mbt repeat	Domain	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR004092	Repeat	Mbt repeat	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07117	K07117; uncharacterized protein	-	Function unknown	-	deepkoala