Detailed information of XP_066925418.1 in Clytia hemisphaerica

Genomic Location: NW_027104090.1:1447618...1477880
NR annotation: XP_047139286.1, lupus La protein homolog A isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10881Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2
P05455Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P28049Lupus La protein homolog B OS=Xenopus laevis OX=8355 GN=ssb-b PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08777RRM_3RNA binding motifDomainInterproscan
PF05383LaLa domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR014886DomainLa protein, xRRM domainInterproscan
IPR006630DomainLa-type HTH domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR002344FamilyLupus La proteinInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR045180FamilyLa domain containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11090LA, SSB; lupus La protein-Systemic lupus erythematosusko05322deepkoala

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