Gene detail

Detailed information of XP_066925563.1 in Clytia hemisphaerica

Genomic Location: NW_027104101.1:737098...761601
NR annotation: XP_047141005.1, uncharacterized protein LOC100211324 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066925563.1

ATGATTAACATGGCTCCACTACCAAATAATTGGCTTCTACTGTGTTTCATCGTTCATATTATCTCCATTGTTGACTTTGTACGCACCTCGCCACCAGCAACAACACAATCTTTACCAACGACAACATCCATAGCAGCATCACTAGCAACAACAGCGTCCATAGCAACGACACCGCCCACAGCAACAACACCATCGTTAGAAACGACAGGTGCATTACCACTAACTTCATTGGAGGAAAGAGAAGTTACCAGAAACAATCTCATCGGACAAATTCCACAGTGGAAAAGAACATGGCATGTATCATTCGAGTTCAAATTATTGGACGTTTCTCCACACTGGACAAACATTATTCGGTTCAGTACGGGCAGTCAAAATATTGGCTACGGAATGCGAATTCCAATGGTCATTATCAGACAAAATACCACAATTATGTCTGTTTGTACAGGAATCGATGACAGTAATAACTGGTGCACTTGGAGCACATTGGAACTCAATCTATGGTATTCATTAGAAATCTCACAGTTTCAAGAAGAATTGAAATACTACTTCGCCGTTCGACTAAACCATACTGAAGTACGCAGAGTTGAAAATACAAAACCACAGATCTACAGAGATGTGAATGTCTTCGCGAGTGATGCCCTTCTTCAACCAGCACGAGCGATGATTCGGAAACTTCAATATTATAACTTACCTCAAGACGAGTTTACACTCATAAGTGGTACGCTTATTGATACCATCCCCACGTGGAGTCCAACATGGTACGTCACCTTTCAAATCAAACCAACGGGAGTCCATAACACTTGGAGTAACATTTTACGCTTCACAGCAGGAATAGGAAACAGAGATTCGATAGGTGACCGAGTTCCAGGTCTTTGGTTTACTAGAGGAGCGCCGAAATTACATGTCGGAACAGCGCTTGGTAACAAAGTTAATCATGTATTCACTTCGGAAAATATTTTTCCTCTTCACTCTTGGACTGAAGTGGAAGTCGTTCAGAAGGTTATCGAATCAAAAACCATGCTTGTTGTACGCATAAATGGAACGGTAGTTCACCAAGTTGAAAATACAATCCCTCGAACGTTTTTCAATGTAAGCGTGTTCGCCAGTGATAAATTTTACGACCCGGCTACCGCACGTGTTCGACAAATGGAATATGGGAACCTGCCCGACGATTATTGTCATTTACCAAACGCCCCAATCGGCGCCGTAGGATTGGGCGCCAAATGTATAATGGTTATGGATTTAGTTGAGTTGAAATACAATGGAGAAGGATTAGCATACTGTGCTGAAAAATATAGTGGTGAAATGATCACCTTAAATTCCCTTGAAGAATTTAACCAACTAACGGATTATTTGCAGCCTGGAGTTTTCTTAGCTGCTGTTTCAGATCGAGAGGAAGAAGGCGTTCTCAAGTGGCAAGATAATCATGTTGGAACACCTCTTGAAATCGTCGGTGAAAATACTCTTGATAAGAACTGCATCAGAATCGTGAATAATCTTCCTGAAAAGTGGTTGGAATGGTATAAATGCACTGACAATAAACATCAACTTGTCTGCCAGTGGAGACATGGTTTAAGCGAATGTACTAAAGACCATGGATTTCAAAACAAAAACAAATGTTTCCGAGAATTTTCACAAGACGTCCTTAAAAGATCAGATGCAGATGAAATGTGTCGTAGTTGGGGTGCAACTTTATTTATGCCGGATAGTAATAAAGAAGTTCAATTTATCAGTGACTTCTTACGATACCGACGTACTTGGATGGGAGCCACTGACTCCGAATCGGAAGGATTACTCAAATGGGATGACGGAACAACATCGGCTACAAAATGGACTTTTCTCACTGAGAGAAATATTGCGAATTCAAGATTGAAAATTTTGGGTGCATTTGGAAGAAATTTCCCTTCGGAAACCAACAATGGAAAAGTGTATTTGGGGGGTATCGTCGATGAAAGATTTGATCCGGAAGAAATAATCACCTTTGAAAATAAACAAGACAGAACTGCACCGAACCAATGGCTTGGATTCCAAGATAGAATATTTGCAAATGAATACCTAAAGATAGAATTCTGGATCAAATTCGTGAGCATTATTCCGTTAAAATCAAGTGGTATCGGAATTAAAGTTTACGGTGTTATCTTTAACGATTGGCTAGACGGTTGTGTTGTGGATGAGTGGTGTCAAGCTTCATTGGGAATTCAAAACCGAAACTCTGGCGACGGAGACCACGTGCTACTGATCTTTGACACAATCCCACATAAACAAATTGTTCGAATCGCTAAATTTGGTATCACAATAGGGAAAGGAGATCACAAAGATGGTGATTTTCGGAGTCAAATAGAATTGGTGAACCAAGCGGAAGACAAAGATTGTACACGGTTTAAACCAATAGCTGATTTCTCTCGAATGTACCGCTGGAGAGAGTGTGAGATGAATCAAAATGATCCTGACTTTGCTGCGCTATGCCAAAAAATTATTGGAGAAATAGTTTCAGAGTGGGGTGAATGGTCCCCGTGTTCTCGTGAATGCAAACGTGGCACGAAAACACGGGCACGGATATGTTACGACCAAACACTTTTCGATGAAGATGATAATTCTTGTGGCGGTGAGCTTCTAACAGATGAACAAGAATGTTTGACCAGAGAAAACTGTCAAGGTTCTGGGTACTACTTGGCTGAAGTTCATCAATCTTGTGATGAATTTTGTGCAAGTAAAGAACTTGGCTGTTCTTCTGAGATCGAAACAGGAAACAGTATAAATGCATTCATGGACGTTTTATTACCTTACACGACCGATCCAACAAGAATTGAATGGCAAAAAACATATAGTCCTGGTTGTTTGGTCGGAGATGTTTGTGTGGAATTCGAAGGCGTTCCAAATGAAGTTAAATGTGATCGAAGGCCGGAAGAGGATAATTTCAGAAGATTTTGTCATTGTGTCAATGAAACGGACGTTGGTTTCGGACCTTGGTCGCCATGGAGTGAATGCTCAGTCACATGTAACGGTACACGAAATCGTCAACGCACATGCTTTGATTATTGTGACGGACAAGTAGAAGAAATTGAAAATTGTGGTGCTCAGTATTGCCCTATCCATGGAGGTTTATCAGAGTGGAGCCAATGGTCGAGTTGTGACGCCTCGTGTGGTGGTGGCACCACGACTCGAACGCGATTATGCGACGCACCAGCGCCACAATACAATGGAAATGATTGTATTGGAAATTTAGTAGACTCGAATGATTGTGGTGTGGGGAATTGCCCAGTGGATGCAACATGGACTGAATGGAGTGTTTGGTCTTCCTGTGACAAACCGTGCAATACTGGACATTATGTCCGGCGTAGAACGTGCAATCCGGCGAATTATGGTGGAAATCCAGATTGCCCGGGTCCTAATGAGGATAAGCAACCGTGCAATGTTGATGTTTGCAGAGAGAAAATATTAACTTGTAATCTTCGTTTTGAGTACGAATTTGACGAAGAAATGCTGGACCCAGAAAGCATTGCATATAAGAAATTCAAACTGACATTAGAAGCTGAGATGAGAGGCGTGTATGCAGAGGGCGGGGGTGTGATGAAAGATCAACTGATTAATATACAAATACACTCGTTACAGCCAGGTAGTGTGATTGCCAACTTCACTGTGGTATATGCGAGTATGGATCAAGATCAAACATTGTTCTTCCAAGATAACGTCGAAATGTTTGGTGCTTTTGGAAAGTTGGAGATCTTACCAAGCTCCAATAATACCTTTGAAATCGGACCAGATTTACTAACTGAACCACCATCAAACGTCACTGCATTTTCGCCGTCCCCGGAAATTTTGTCGATTTCATGGAACGCTCTCAACCAATCAAACGTCGACAATTACATCATCTTTTATCGTGAAAAATTACTTTCAAATCAACCCTACTCTACGTATGCTACTGAAAACACGACAGCTCATTTGACGTGGCTGAAACCAGGGACGGAGTACGTCTACAGAGTATTAGCGTTTTCAAATGGCGAAGGGAATGGTATAGCAAGTCTTTTGAGTTCTGTATGGACTATGGAAAAGTTACCCTTGGTCTCACCTTTGGACATCAAAGCTTTGTCTTCCGGACCATTTTCGATTTACGTCAGTTGGATTGGAGTTCCTCAAGAACAGATGAATGGAATTCCTCTCGGATATCATATTTACGCTTATTCACAAAACTCTTTGGTATCAACACAAAACGTGTCTTTTGATTTGAGTGGCGTATCTTACACAGAGGGATTGGAATCGAGTACGTCATACATTTTTGAAGTTTGCGCGTTCAATAGTGCAGGAGATGGTCCATGTGACAAAGCAAGCGCTCAAACTCTGAACTCAGCTCCATCAGCACCACCTGCGAACATTCACATCAGTTCCATCAAAACACACACTCAACTTACAATACACTGGTCTCCACCTCCAGCTGATCAAATCCATGGTGATCTTTTGTCATACAAAATCAAAGTCTTCCTAATCAAAAGTGGAGCTGACGTCTATATCAACCCTAAAATTGATATTTATGGTTTGCATCCATCATTGAATAGCCTCACTTTGAAGTTTCTGGATGCAAACACGTTTTACGATTTTGAATTAATGGCTGTTAATCAGTTTGGAGAAGGAGTCAGCGAAAATATTGTCGGAAGAACGTGTCTTTGTCCAAAAGTGGTTTCAACAAACTATTATCTACTCGCTCCATACTTAACCGAAGATGCTGACAATCAACTTTCTGGAGTGTTCGGCGAAATACTTCAAAATGCAATACAAGCTGCATGCGGTGTGTGTAATTCACCGAACGGACTGCTTCATTCGAAATTGGATACTTTACGGAATGGCAGAGAAAGCCTCGCTAAAAAAACAAGTGAATTAAAAATTTTAAAAGAAATTGACGAGTTTACAGATTTATCATTCCCGATAATTGGGAATACACATTCGGACGAAATGGTTGGTTATCCGTTTGTTCCACTTATCGGACACCCAGGTGTTGTGGCGATTGTCCGAGATAAAAATATCAACGAGATTGTGATAGAAATGATTATGATGATTTTGGGTATCTATCCTTTGATTGGATTGAACTTTCTAATGATGGTGGTAGCTGGATATATCGTATGGCTTTTGGAAGCTTGTAATAATCCTGACGAGGACATTGATTTTTCCAAAACTTGGATTCGTGGAATTTATGAGGGGTGGTATTGGGCGTTCATTACACAGGGAACACATGGGTTTGGCGATTTTACAGTGACAAGATTTTACTCAAGATGTTTTGCAGTTGTCTGGTCTCTCTTTGGAGTAGTGATGACGTCATTGGTTATTGGAGCCTTAGTAACGGCTTTAACAACCGTAAATGGTGCAGCTGAGTTTAAAGTTTACGGTAGCGAGGTTGGAGCGCTGAACGGCTCGTTTGAAGAAAAACTTGGACTTTTGAGGAATGGAAAGGTTAATGAAAAAAGGGCTTACAAAACAATCACAGAACTCAGAGACGACTTGCTTGCAAATGAAATCAAAGGAGTGCTGCTAGATGCATACACTGCTGGAGCGAACGCACATCTCTTCGCGGACGAACGACTCCGCGTGGCCACAAAATTGGAATACCCGCGGTCGTATGGATTTGTTTTGTCAGGAGATTTGAAAAGCATGGCGGCAGAATTCCGAAGTTACATCAAGTCTGACGAAGAAAGAATTTTAAAAGCTTTAAGTAACTCCACTGTACCAATGGGGGTTTCGCCACCAGCAGAGTTGAAATCACCTTTCGATCCAGAATCGAGTATCTTATCAACAGCTTTGGTTTCCATGACAATAATGTTTGTCGTTTTTTCAATCTTTGGTTTGTTATGGTCACACTATTTGAAAAAGTTGAACCAGAAAAATGCTCAAAAACTTGACAAAAAAGATATTTTCAACCAATGCAACGATATGGTGGCAAATTTCAAATCATCAATCGATGGCAAAATCACTGAACTCGAAGAAAAACATTCTCTACAAAGAAAACTTTTGTTCAAAGATTATTACGGATATAGTGCTATAGATCATCATGCGCGTCACGGGGATAAATTACTGAAAAGGCGAAATACAGTTCATCCAGTAAGTCCAAAAAAGGAAGATCAACTGGATGAATATGAATTAGATCTGGAAGGCGGAAGAAACCTCTCTGCTCACGTTGATAAACCAAGAACGCCCTTCACTGAAGGAGATTTCGATGTAGGTCAGTTAGAACAAATAGAAGAGACCGATATTCAGACGTTCGAAGTTGTCGAGTAA

Transcript

Protein

XP_066925563.1

MINMAPLPNNWLLLCFIVHIISIVDFVRTSPPATTQSLPTTTSIAASLATTASIATTPPTATTPSLETTGALPLTSLEEREVTRNNLIGQIPQWKRTWHVSFEFKLLDVSPHWTNIIRFSTGSQNIGYGMRIPMVIIRQNTTIMSVCTGIDDSNNWCTWSTLELNLWYSLEISQFQEELKYYFAVRLNHTEVRRVENTKPQIYRDVNVFASDALLQPARAMIRKLQYYNLPQDEFTLISGTLIDTIPTWSPTWYVTFQIKPTGVHNTWSNILRFTAGIGNRDSIGDRVPGLWFTRGAPKLHVGTALGNKVNHVFTSENIFPLHSWTEVEVVQKVIESKTMLVVRINGTVVHQVENTIPRTFFNVSVFASDKFYDPATARVRQMEYGNLPDDYCHLPNAPIGAVGLGAKCIMVMDLVELKYNGEGLAYCAEKYSGEMITLNSLEEFNQLTDYLQPGVFLAAVSDREEEGVLKWQDNHVGTPLEIVGENTLDKNCIRIVNNLPEKWLEWYKCTDNKHQLVCQWRHGLSECTKDHGFQNKNKCFREFSQDVLKRSDADEMCRSWGATLFMPDSNKEVQFISDFLRYRRTWMGATDSESEGLLKWDDGTTSATKWTFLTERNIANSRLKILGAFGRNFPSETNNGKVYLGGIVDERFDPEEIITFENKQDRTAPNQWLGFQDRIFANEYLKIEFWIKFVSIIPLKSSGIGIKVYGVIFNDWLDGCVVDEWCQASLGIQNRNSGDGDHVLLIFDTIPHKQIVRIAKFGITIGKGDHKDGDFRSQIELVNQAEDKDCTRFKPIADFSRMYRWRECEMNQNDPDFAALCQKIIGEIVSEWGEWSPCSRECKRGTKTRARICYDQTLFDEDDNSCGGELLTDEQECLTRENCQGSGYYLAEVHQSCDEFCASKELGCSSEIETGNSINAFMDVLLPYTTDPTRIEWQKTYSPGCLVGDVCVEFEGVPNEVKCDRRPEEDNFRRFCHCVNETDVGFGPWSPWSECSVTCNGTRNRQRTCFDYCDGQVEEIENCGAQYCPIHGGLSEWSQWSSCDASCGGGTTTRTRLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCNPANYGGNPDCPGPNEDKQPCNVDVCREKILTCNLRFEYEFDEEMLDPESIAYKKFKLTLEAEMRGVYAEGGGVMKDQLINIQIHSLQPGSVIANFTVVYASMDQDQTLFFQDNVEMFGAFGKLEILPSSNNTFEIGPDLLTEPPSNVTAFSPSPEILSISWNALNQSNVDNYIIFYREKLLSNQPYSTYATENTTAHLTWLKPGTEYVYRVLAFSNGEGNGIASLLSSVWTMEKLPLVSPLDIKALSSGPFSIYVSWIGVPQEQMNGIPLGYHIYAYSQNSLVSTQNVSFDLSGVSYTEGLESSTSYIFEVCAFNSAGDGPCDKASAQTLNSAPSAPPANIHISSIKTHTQLTIHWSPPPADQIHGDLLSYKIKVFLIKSGADVYINPKIDIYGLHPSLNSLTLKFLDANTFYDFELMAVNQFGEGVSENIVGRTCLCPKVVSTNYYLLAPYLTEDADNQLSGVFGEILQNAIQAACGVCNSPNGLLHSKLDTLRNGRESLAKKTSELKILKEIDEFTDLSFPIIGNTHSDEMVGYPFVPLIGHPGVVAIVRDKNINEIVIEMIMMILGIYPLIGLNFLMMVVAGYIVWLLEACNNPDEDIDFSKTWIRGIYEGWYWAFITQGTHGFGDFTVTRFYSRCFAVVWSLFGVVMTSLVIGALVTALTTVNGAAEFKVYGSEVGALNGSFEEKLGLLRNGKVNEKRAYKTITELRDDLLANEIKGVLLDAYTAGANAHLFADERLRVATKLEYPRSYGFVLSGDLKSMAAEFRSYIKSDEERILKALSNSTVPMGVSPPAELKSPFDPESSILSTALVSMTIMFVVFSIFGLLWSHYLKKLNQKNAQKLDKKDIFNQCNDMVANFKSSIDGKITELEEKHSLQRKLLFKDYYGYSAIDHHARHGDKLLKRRNTVHPVSPKKEDQLDEYELDLEGGRNLSAHVDKPRTPFTEGDFDVGQLEQIEETDIQTFEVVE

Uniprot

Uniprot term	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q28178	Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2
P07996	Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052065	Family	Complement and asymmetry regulator	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906	PROPERDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan