Gene detail

Detailed information of XP_066927154.1 in Clytia hemisphaerica

Genomic Location: NW_027104175.1:2471110...2488950
NR annotation: XP_047136784.1, putative leucine-rich repeat-containing protein DDB_G0290503 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066927154.1

ATGTTAACACTTTGCTTAGTTTTGTCGTTATTTGGTAATTTTTTACCAACTGTATCTTCCTACTTGAATGTAGATGAGATCACTAATCTCAAATATGGCGTTGAGATTTCAGACAAACCTGTTCTTTTTCAAGGAAACTCCTTTTATCAGAGCCCTGATGTCATGACAATCTCATCAAAATTTGGACAAAAATATAGTTGTAACTTACCGGTCCTTCAATTACCTGAGACAGAAGATGACAATGAAGATAAAAAGATTGATCCAATGACTATCATATCTACCATTGACAAAAGTCTCAATGATACATGTTTAGAGTTTAATAAAGGCTGGTGGACGTACAAATTATGTCATAAGAAGAACATCACTCAGTATCATGTCACTGAACAAGGTGAAGTAGATAGCAAAACTACAGAGCTTGGTGCTTATGAGAAAGAGGATGACTGGAAAGATAAAAATCTAGACGACAAGAAAACAAAACATCTTTATCATAAAGCTGACTACATCAATGGTTCAAAGTGTGATCTAACATCAATATATCGGTCAACTGTAGTCCAGTATTATTGCAGTGATGAGAACCTGAATTCAAATATGGTTATCAGAGTTGAAGAACCAGCGACATGCGAATACATCATTTCTGTGCATGTCAAGAAACTATGTACTCATCCTGCTTTTGAAGTCAAAGAGAAAACAAAAAAGGTCACACTGACCTGTTCACCTATATTAGGAGAAAAAGCATTCAAAAGATACCAAGAAGAACAGAAATTTATTAAAGAAGAAAATGACCGCAAAAAGAAAGCAGCAATGGAGAAATTTGCCAAGGAGAAAGAGGAAGCTCTGAAGCGAAGGTCTGGAAACTTTTTCAAGCTTGATGACACAATTGATACCGGGAGTGATATGGAATTTCTACCGGTGACATCAGAGTCAATTTTTGAAGAGGACGAAGGCTTGAAATTGGTTGGTGATATGTTGAAGAAAACAAAAGAAATTTTCAATCCACCAGAAGAAGTCGAAGATAAAAAAGAAAATGTAGCTGGAAAGGACGCTTCAGTTGGCTCTGCAAGCAAGCTAGATAAAACAAATAAAAAACTGTTCGATTTCATTGGTAAACAGCGTACTCAACTCACCAAACAATTTGAAGACTTAAGATCATCGACAATGAAAGAGATGGCTAGGAGCAAGTCTATGTTGAAGACTTTGAGAACTGTGAAGAAGATTGGTCAAAAGACAGGTGACACCGACGAAGATGGTGAATTGGACAGCTCCATCAAATCTCTGGAAGAGGGCATTGAAAAGTTTCAGAAACAGATCGACTCGATTGATGATAAAATGCAACACGTGACTGAAATGGAAAAGCGTACTGAAAAAGCACTTGATAAAATGAATGCGAGATTGAAACGTCAAGAAAACATTCGAAAGCGTTTAGACGAGACATTCAAATCACCCAATGAAGGCAAAGATTCAGAAAATGCGGAGGAAGAAAAAAAGGAAGATTATAGCTTCATTAAATTCCCTCACCACCCTGATCAAGAGGAACGAGAGGAGATGATTAAGGCCTTACCGAAACATTTGAGAGACATTATGCAATCTTTTGAAGAGAAAAAGAAACAACAAAATCATGAAAACAAAGAAGACCGTCAGAATGAAAATCATGAAAAACTGAAAAATAAGAGAGCTAAAAAGTCCATTTCTATGGAAGATATACTTTCTGGAAATGAAGAAGAGGAAAAGGAGGAAGGAGTTGAAGCAATGAAGAAACTAAAAAACGTTGCTGAAGACTTGGATGAAGAGAATAGTGATTTTACCGATTTTTATGAAAGGATCACACATAAAGAAGATGTTTTTAATAGGAATAAAAGGGAATCAAGTGAACAAGACATCGAAAAAGAAATAGCAGAACAAAGGAAGAAAGATTTAAAGGTTCGTGTTCGAACGATCAACAAACAAGAAGCTGACAAATTAGAAACCAATCATGATATGGATGAAAAAACAGAAATGAGAGCACGAGAGTTGGAAGAAAAAGTCAAAAAGCAATTGGAATCACTCGGTTTAGACGTCAAGAATAAGATCAAAATCAAAGTGATCACGTCAAAGGATGAATACAATAAGATGTCCAAAGGTGAAGAATTGATGAGCACCGATCAATTAAATGATGTGAAAGACATGTTCTATGATATTTTGGGTGGAAGTCAGGAAAAGAAGAAGGAAGAACAGCGTCAACAATCACTAGAAGAAAGTTACATGAAGAAATGGAATGAAAATGAAAATGACGACGAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q3MHX6	Protein OS-9 OS=Bos taurus OX=9913 GN=OS9 PE=2 SV=1
Q13438	Protein OS-9 OS=Homo sapiens OX=9606 GN=OS9 PE=1 SV=1
Q4IEA7	Protein OS-9 homolog OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=YOS1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07915	PRKCSH	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR012913	Domain	Protein OS9-like domain	Interproscan
IPR045149	Family	Protein OS-9-like	Interproscan
IPR044865	Domain	MRH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15414	OS-9-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005788	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0030970	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan