Gene detail

Detailed information of XP_066927712.1 in Clytia hemisphaerica

Genomic Location: NW_027104192.1:1148543...1156180
NR annotation: NP_001296676.1, matrix metalloproteinase-14-like precursor [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066927712.1

ATGAGAACCAACTTTATTCTTGGGTTGCTACTGTTTGTTGCAACCATTGCAACGATGTTGAATTCTGCAGAATGCAAAAAGGGGAAAGGACCAAAGGGGAAAGACAAAGGACCGAAGGGTAGAGATCGAAAAAGTCGGAAGAAATTCAAACTTGAACCAAAGAAATACTTATGGGACATTGGTTATTCATCTGACCCTGAAATCGAAACGGAAGACCCTATTCTCGATTACCAAGACTTTTTTGGTCTACCGCTGACCGGTCAACTTGATTACGTCACTATGCGGACAATGGAACAACCAAGATGCGGCATGACTGATCCGATAGAAAGATTCAAGGATAAGAAATATGGAAAAGGGAAAGGTCCAAGACGCGGTCGGAAAGGAGGCAAACCAAAGAAATATCGAATCCACCGCGGAAAACGTTTCCTTCAACAAGGAACAAGCTGGTTACCGTTATTTGAAAAGACTGGTGAGAACAAGCTGAAATGGACATTATTAAGTACCGGCACACAACTTCTATCACGTGAAGAAGTTCTTGTAGAGACGAGAAAAGCATTTCAATTTTGGGCTGATGTCACCAATTTGATTTTTGAAGAAGTTCCATTGGAAAATGTTGATAAGAAATATGCAAAAGATGACATTGAGATTTTGGTGAGTTTTGGGAATGAAGACCATGGTGATCCATATCCTTTTGATGGCCAAGGTGGAACTCTCGCGCATGCGTTCTACCCATTGTCCAATGACGGATTATCGGGTGACGTCCACTTTGATGACGATGAAGATTATACAATCCAATCGGAACAAGGAACCAATTTATTGTGGGTTGCTACACACGAAATCGGACACTCACTTGGTTTGGAGCATTCCAATGTAAACGGAGCTTTAATGTATCCAGTGTACACAGGGTATAGACCAGATTTTGCACTAAATATAGATGATATTCTGGGTATTCAGTCAATATACGGTATCAAAGAAACTCCCACAACAACGACGATCACCCTTCCCACAACATCGACGACCACCCTTCCCACAACATCGACGACCACCCTTCCCACAACATCAACAACCACCCCTACAACGTCAACGACCGCCCCTACAACAACAACGACCGCTACTCCGATAACAACAACGACCAACCTTCCAACTACGACGACAACTCTTTCAACGACAACGACACCTATGCCTCCCATGACAACGACTACCACTACAACTACTTCAACTGACCCTATTACAACAACAACTACGACAACAACCACTCCTCAGACAACAACGACAACGACCACCCCTCCAAAAACTACGACCACCCCTGACCCAGTCCCTCCAGTAACAAAACCAAAATGTCCAAGATCACTTCGGCCTCATGCTTCTTACTACAACAAGAATACACAAACCATAAATTTATTTACAAGAGATAGAATCATCACTTATCACAATGATGGTCGTTTAACAGAGGGAGCTACATTCTCACCACAAGAGAAGAGAAACTTCATTAGCCACCGCATGGCTTCCACACAAATTCAATATAAAGGAGAAACTGTGGAATTGCGATTTGTTGGCAGGAGTTACTTCATCATCAAAGATTCAGAAAAACCAGTAGGCCCTTTCACCTACCATGCAATGAAGAAGCCTAAAGGACATAAAGGGCCCAAGCGGCGTAAAGGGTCCAAGGGCCACAAAAAGAACAGTCGAAAAGGAAAGAAAGAGAAAAAAAAGCCTGATTCTAGGCTAAGCAATCCATTGAATATTGTTTTACCAAGAAACCATATTGTAACGGCTGCAACTGTTTGGAAAGGTGGAAAGCTGTATCTGTTTGCTACATCGAGGTATTACACACACGATTTGAGGAAAGGAAAAACACACAAGAAAAGTCACACCTTAAAACATTTGGTCAAGCGATATCGATTGAAAAGCATTAATGCAGCTTTCTGGAATGAGAAGAAGGGACATTTGGTTCTTTTCTCCAGATCATCAAACTATTTTTACATCCTCCATGACCGCCCAAAGAAGAGACAGAAGAGGGTTGAACGAAAACCACTTCATAAAGAATTGCGTAAAATACCAGAAAACAAACGATATTGTCGATTATAA

Transcript

Protein

Uniprot

Uniprot term	Description
P91953	50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus OX=7650 PE=1 SV=1
P22757	Hatching enzyme OS=Paracentrotus lividus OX=7656 PE=1 SV=1
P34960	Macrophage metalloelastase OS=Mus musculus OX=10090 GN=Mmp12 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021190	Family	Peptidase M10A	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07998	MMP19, MMP18; matrix metalloproteinase-19 (RASI)	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala