Gene detail

Detailed information of XP_066928082.1 in Clytia hemisphaerica

Genomic Location: NW_027104209.1:793285...803092
NR annotation: XP_047130711.1, CCR4-NOT transcription complex subunit 10 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066928082.1

ATGCCACAAATAAAGCAAGAAACTCAAACAAGAGAAATTGCATCAGCACATAAGGCTATAACAGATCAAGATCGACAGATAGCCGCATCTGCATCTTCATGTTTCAAAGAGAAGAAATATGACCAGTGCTCGCAACAAATGAAGAAACTATCAGAGCAAAGACCCCATGATCCAAGAGTCATTGTCAACAAAGCTGTTTTGGATTATTACATCTCCAACTTTAGCAAGACAGACTATTTTATGAAACAAATGCAAAATGCTAAAAAGCAGTTCGAATTTGGTAACTCAGGAGATGAGCTGGATGATATCGATCGCTGTTATTTCTTTTATAATCAAGCTGTTTTACATTTTTATCTGAAGCAATACAAAAGCTCATTGAATCTTCTTGATCGTTTATACAAAGTTATTGAACCACTAGGGGATCTACTTGCAGCTAAAGTCTGCTTCCTTTTCGTTGAAGTCTGTTTATTGAATAACCAGCATGACCAAGCTTTTGGAATGATTACGTACATCGAATCTGTCATCTTGGCAAAACCTCTGGATAATAATGCCAAAAATGTTGAGTTCATGAAAGCCTGTCAAAACAAACTACGACTGTCTAAAGCAAGACTTTATTTGGTTCGAGGATTTTACGCTCAATGCAAGAAGGAACTCGAACTTGCCATAAGTGGTGAACATGAGCCTACAGAAGTTTTATTCTTGAAGTCGCAAGTTGAATGTCTTCGATGTAATTACCAAAAGTCCATAAGCATCCTTCACAGCACCAACAAAAACACACCCTCAGATCCATACAAACCCTTACAAACGATGTACCAAAACAATTTGGGTTGCATTCATTTCCTGACCAAGAAATATAACCTGGCTGTTTCATATTTTAAGAAAGCTTGCGTTGAAAATGCTGCAATCATGAAGAAACTACAATCCATCGATAAAAATCAACCACTATCAGGTCGTCCTTTACATACACTCACCATCAACAAAAGAGCTGAACTATTCTTTAATATGGGGTTATCCTTACTTTATGCCGGTCGACCTTCACAAGCTTTCGAGTGTCTCTTGCAATCACACAACGTTTACCAATGTAACCCAAGATATTGGCTTCGGTTTGCTGAATGCTGTATAGCAGTTCATCAAGAGACAATCGAGAAAGAGTTTTCTTGCGTCGATCGCAAAAATATGAACGTCTATGATGCCATGGGGAGTGGTGTTAATCGAAAACTTGTAGTCGCTCCGACCCATTTTGACCAACACTCGAAATCAACGCCATCGACCTCACCAACAAATAACGTACCGACATTGAGTTTCGGAAGTATGTGTTTATCAAACGCATGTACGCTACTCCCTTCAGAGTCGGTACTGGAAGAAAATATGACGAAATTTCTTCAAAACGAAAAACCAGTTCCAGGTGGTGCTGCAGATGATAAAGAGTCAGTCAAACGTAGTTTCATCGGACGAATTTTTGTCGATGCACCTCCAGGGCATCCTATACAAACGAAAGAAATTTATCACTTAAGAGCATCAGTGGTGTGCTGCCAAGCGTACATTTCACTGACCATTGGTGACTATTACAAATGTGTTGAACATTCCAGATCTCTTCTACGTATGACTCACATCTCGGGCCCTCAAAAATTTCTGGGACATTCGTACTTGGCTGAATCGTTGATCAAATTAGACAAGATTGCTGAAGCTATTCAAGAATTATCGACAGATAACCTGAAAGCTTATCAAACATTTGACCAAGAAACTCTCGAGTTAAGTACAGTCGATACTTTCCCAAAGAGCTTGGGAAGTGCACGCATGGTGATGATGTTGAATTTGGCGAGTGTGTACGCCATACGTGCAGAATACGACAAATGCAAACAGATTCTGCATCAGATTGCGCTAGTTGTAGATATGCATTCACCGATCAAATATCATGCAATATTACTGTCCGCTTATTGTGAACTACAGCTAGGTAAAATCACCAGTGCGTTAAGCTTGATAAAAAAACACGAAATCTTTCCACACGGGCGTTTGGTTGATCGTGTTGAAGCGGCCGCGCGGACAGCCAACAACCCAGTCGGCGGACAATACCCTCAAAATATTTTACACAAATTCAACGAAATGACTATGTCTATGAACCAGCCTTTTGTACCAATGATGCAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8BH15	CCR4-NOT transcription complex subunit 10 OS=Mus musculus OX=10090 GN=Cnot10 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039740	Family	CCR4-NOT transcription complex subunit 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12979	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12607	CNOT10; CCR4-NOT transcription complex subunit 10	-	Messenger RNA biogenesis	ko03019	deepkoala