Gene detail

Detailed information of XP_066928087.1 in Clytia hemisphaerica

Genomic Location: NW_027104209.1:910030...925159
NR annotation: XP_002164359.1, nuclear pore complex protein Nup93 [Hydra vulgaris]
Species abbreviation CHEMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_066928087.1

ATGGGAGATGTCAATTTTGAAGATTTGTTGAATCGAGCAGAACAACTTACTGCTGATGTGGACACTGGTACTGAATTACCACGCATTCAAAGGAATTTACCACAACTTGCTGAGGCTTCACAACGACTTTTATCACGTACCCTTGGAGGGGTTGGTGAAACGTCTGATGTCCAAGCCTCGCTTCTTTTATCTACTAAAGGCATCGAAGTTCCAAAGTTATCTCAGCGTCTAGAATCTTTAAATACAACAAAGACTTTTGAACCAATTGAGCCAGTGATTGAAACAGATATTCATGGGTTTCTGAAAAACGAGAGAGAAAATGCTATCCTTGCCACAATTGAGGAAACCAAACGTAGAACTTTTGAAGAATCTGAAAAACTTTTCATGGATAGCTTAGAAGATGAGTGGGAAAGAGAAAAACAAAAAATTTTGAATTCACTTCTTGGTGCTGGTAAACAAGCTATGAGCTTTCCAATGGATTCAAGTAGATTTGAGGAAGCTGCGATCACCAAAGGAAGAAGTTCACTAACATCAATTGAAATGGGATATGCACGGCAAGTATTTCTATGCAATGAATCCACACTACAAGGCAAGAAGTGTAACTATGTAGAAAGCTTTAAACAAGTATCACAAAAATTTAATGATCAAAATGTCAAAGATACTTGGGGACTTATCGAACATTTAGTCACAAATCTACCTAAGCCAGCAGGTAGTACATTGAAGCTACGTCAGAGCAAAGATTTCCAAGCTGCTCTTGTTAAAAATGCTAAAATCTTTCTCGAAAACAGATATAGAGACTTTGTGGAGAATTGCGTATACAGCAATTTACAGCAAGCCAAATTAGGTGGAATTCCTGGTCTTTACAACTTAGTCCAAAGTTTTTTGAAAATTAAAGTTGTGTCCAGTAGTAGCGGATTTGAAGATGGGCTTGTCAATGGTGTTCCAGTATGGCCATTGATATACTTCTGTTTGAGATGTGGAGACAAAGTTGCAACTCAGAGGGCTGCTGAAGGACTCCCACCTCAGTATGGAGAGTTCAAAACTTCCCTTAAGGAGTACCTAACAAGCCCAGATAATAGACTTCATCCTAACAATGAAGCCAAAATCAAGCTACAGTACAAACGAGTCATCAGGTCATCCCCAGACCCCTTCAAACGTATAATCTTTTGTATAATTGGGCATTGTGATGCAAACGAGGCACACACTGAGGTAGCCAAGAAAACCGAAGATTATATCTGGTTGAAATTGAACCAAATTGACTTTGCAACTGAGGATGAGGATATTGTAACTTTACCAAGATTCCAGAAGCTTCTACACGAGGAGTATGGTGAAAGTCATTTTCGAGCATTTGAACAACCCTATCTGTATGCACAAGTTCTTTTTCTAACTGGACAGTTTGAAGCTGCAATCGAGTTTTTGTCACGTCAAGACCATTGCAGATGTCATGCAATCCACATTGGAATTGCACTGCATGCAGAGAATCTCCTCCTTGTACCCAATGCTATACACTCGTCTTTGTTATCAGCTGACCCGAATGATCCGGTACCTTTGAAAAGGTTGAATTACCCCAGATTAATCACTATCTACACAAGGAAATTTGAAGTGACCGACCCAAGAGAGGCCCTGGAATATTTCTACTTGCTGAGAAATATTGATGGTGCAAATGGAGATGACCTGTTCGCTTCGTGTGTCAGTGAGTTGACCCTTGAAACGCGTGAGTTTGAAACGATCCTTGGATCTGTTAACCACGATGGCTCCAAAAAGCCTGGTTGTGTGTCTAAATTCAAATTGGACGTCAAGAATATCGTATCCACTATCGCCAAAGATGCTGAGAACAAAGGGAGCTTTGAAGATGCCGCCATGCTTTATGATCTGGCCGATAACCACGAGAAAGTACTGGAGCTTCTAAGTAATCTTATATGTCAGTTTGTAGCATTAGCGAATAGCCCGAAATCGTCACGTGAGCGCATCCAAACCATGGCCCGAGGTATCGCGGAACGTTACAAGACGCGCGGTCACGATGGTAGCCGCAGCAGAAGCTCCACATTCTACTTGTTGGTCGATTTGATGTTTTTCTTTGATCTGTACCACCAGAAACAGAATGAAGAAGCCTTAGATGTGATTCAAAAGATCAAATTGATCCCTTTATCAATGGAAGAGGTGGAACAAAAAGTCAACTCCTTCAAACAGTATAGCGACGAGATTCGTCAATGTATGCCCGACGTTCTCTTGAAAACAATGAACATTTTGTACGAAAAGTTCAAACAAAGCAGATCAACGTTGAGACCGAGTGTTCTGGGAATCCGAAAAGAGAAGGACGAAACTTACACCACTGATCTGAAAACAAAAGCTAGAGCGCTTGTGACGTTCGCTGGATTGTTACCGTATCGTATGCCTGGAGATACGAATGCCCGCCTCGTTCAGTTAGAAGTGATGATGCACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NX12	Nuclear pore complex protein Nup93 OS=Xenopus tropicalis OX=8364 GN=nup93 PE=2 SV=1
Q7ZX96	Nuclear pore complex protein Nup93 OS=Xenopus laevis OX=8355 GN=nup93 PE=1 SV=1
A5PJZ5	Nuclear pore complex protein Nup93 OS=Bos taurus OX=9913 GN=NUP93 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004800 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04097 all species →	Nic96	Nup93/Nic96	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007231 all species →	Family	Nucleoporin interacting component Nup93/Nic96	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11225 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14309	NUP93, NIC96; nuclear pore complex protein Nup93	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.