Gene detail

Detailed information of XP_066929010.1 in Clytia hemisphaerica

Genomic Location: NW_027104254.1:92055...114955
NR annotation: XP_002114296.1, hypothetical protein TRIADDRAFT_11949, partial [Trichoplax adhaerens]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066929010.1

ATGGCTAGCAATAAATCACTTTTAATCCATGATGACTACATGAGGCGAAAATATGAAGATTTGAGTGATGAAGAAACAGGAAAAATATTGGATTTTGGTCAGTTGAAATTCAAGAAGACTTCCAAAGTTTTGAATGGATCACCAGCAAAGAAGACAGCTCAAAATCTCAAAAACGGAAACAGCCTTGCTAAAGGAAAAGAAAAACCAGCACTCGACATCCTTCCAAGGTCCGAGAAAGTTCCATATAAACTGAATGAAGATCATGATGTCTCGATTCCAGCTTCCATAAACCAATATTTACATCAATATCAACGAGAAGGTGTTTCCTTTCTATGGAACCATTACTGTCAACATAAAGGATGTATTTTGGCTGATGACATGGGCCTTGGTAAAACTATCCAGGTGTTGGCTTTATTTGCTGCAGTTCTTGAATCGAAACCCAAGAATCCACCGATATTTCTTGTTGTCGCACCCACATCCGTTCTATACAATTGGCAAGATGAAATGGACGTCTGGCTCAATATCAGAGTTGGCATGTTTCACAGGAAGAACAAGCAAGAAATAATCGATCAAGCGAAAAATAAAGAATTTGATGTTATTTTGACAACCCATGAAACTATGAGAATCTATTTTGACATGGTATCTCAAATCTTATGGTCAGCCGTTATCTTTGACGAAGTTCATCGCATCAAAGAGGAGACATCTCAATTAACGCAAACATCAAAAGAATTACCATCATTGTGTCGTATCGGTTTGACTGGAACGCCTTTACAAAACAACTTGAAAGAGCTATGGTGCTTGTTGGATTGGGCAAACCCAGGATGTCTAGGCTCTTCAAAGGCATTCGAAGAAAGATTTGAAAGGCCAATCATGTTTGGACAGAGGCTAGATGCAACAAAAAGGGAGCTGGCTACTGCGCGAAAAAAACAACAAGAGCTCGCTTTGCTGCACAGTGATTGGATGTTGAGAAGGACCAAAGAAAATCATCTTCACGAACTACCCAGAAAAGACGAGAAAATCGTATTTTGTCCAGTCTCGCCGCTCCAAAAAGCTATTTATGAAGAAATTTTGAAACTACCTAAATGCAAGATGTTGCTTCTCCTTGACAAGAAATGTCGCTGTGGTAGCGGAAGAAATGGTAGAAGGTGTTGTTTGAAGAGATTCAACTGGCGGAAGATAATGTTTCCATTCATCCAACTCTTCTTGAAACTGTCCAATCACACAGCTTTGCTCTTCCCATCACCCATCAGTCATGACCGGAAAACGAACAGAGTCAACAGTGAACTGAACATGGAAGTCTTCGAGCACCTTCAAAAGATGTTTCCCAGATTCAAAGAACTATCATCAGGTGGAGCTAATCTGTTCGCAAATCTCTCAAGTTTTGAACTGTGTGGCAAGATGGCAGTCCTTCACAAATTGATGACGTCACTTTTAAGCAAGGGCGACAAAATACTGCTGTTTTCAAATTCCACAAGGCTTTTGAACATTCTTGAGACATACATAGCGAGCCGAGGTATATTGACCAGACGAATTGATGGATCAACAGCACCGAAACAAAGACACTACATCATGAAAGAGTTCAATAACAACCCCGAGCTCTCTGTGTGTCTGCTTTCGACCAAGGCGGGAGCATTAGGAATGAATTTCACAGGTGCAAATGTCGTCATTATTTTCGATCCGTGTTGGAACCCGACTTTTGAACAGCAAGCTCAAGATCGGGCTTACCGAATCGGGCAACGTCGGAACGTATCGGTTTATCGATTAATATCGGTTGGTACGATCGAGGAAAACATGTATATGCGGCAGATTTATAAACAGCAACTGTCAAACATAGCTATCGAGATGTCAACAGAATCGCGTTATTTCACTGGAGTAGCGAACAATGTAGAACATCATGGAGAACTGTTCGGTGTTTCGAACATGTTCAGATTCAGTGCTGATCATACCAGTGGCTTTGCTAAAGAAGTTTTTGGGAAAACGAAACAGATTGAAAACGATGTCGCGATGGCACGCTACCAATCACCAGTCTCGAGAAAGAAACCATCACAAAGAGTGAAACCAAACCCCCGTCACCAACCCCTCGAAGATTCTGATGATGATTACACACAAGACGCCACTCAATGTGCCGATGATATTCTCACCAATGATGATGGTGACAGTGAGAATGAAGAGGTCGAATGGTGTGATCAGGTGGAAGCAGAACTTGATCAACTCTTAGGGAGCTGTGATGTCAGTTTAGCACCAACAGCAAAACACTTAGTAGGAGCAAGCCGTCACGAAGAAAAGTTATCAAACAAAGCAATCAGCGATGTCTTTTGGAAAGGAAAAAATTCACAAGATTTCGCCAACAAGGAGGAGAGTCAGGAAAGCCAAGACGTTTGTTTAGGAAGTAAAGAAGAACCACAAGCGATTGACAACCGTGATTTTAAACCACTACCTGCTACTGCGCGCATGCGTGAGAAACACATGTTTGAAAGAATCGGGAATACCATGTTCATGATCGGATCGACACCGAAAAGCATTATGGGGGAACATTTTGAAGAACTTGCCAAAATGAATGGTGTCAGCGTCGAGAAACTAGCTGATTTCATTCTCAACCAAAGTGAAGCTGAATCGAAAAAGATGTTGCGAGATTACTACGTCAACAAAGAGCCAAATTTACGACTAGTTTCGTCTTTTGATAAAATTTACGGTAATGATGAAAATAAATTTACGACCCTCGTTGATGGCGATTACGACACGAAACATGGTTTATTGCGAGGGAATAGTTCGTTGAACAGCAAGCGTCCTCCGGCAAGACGGAAGAATCATCACTCGAAAACGAAAGACTTTTCGTCACTTCTTGATAAAGATAATGATTTGATTAAAAGTTTCAGGAAGGAGCGAAAGAAAGTTACTTCGCCCATAGAGAAACAATTTGATCACTTCTCAAAGATTGATATTTTGGGATCCAATAAACTTAAACGGAAAATAGATAATTCATCGAAAACATGTAGTAGGCCAGATATACATAACCACCCGTTTGCCGCATTTGAGAAAATACGAGAAAGTTTTCATAAAAAAGAGACACAAATTATTGATGATTGGTCGAGCGATGAAGAAAATGAATCGAAAAGAAATGAAAAATCTGTTCCTCGCGAAGGAGAAACTTCTAAGCGCACACCAAAGTCGTATCACAAGTTAACGCCAGCTTTGAACAATACACCAAAAGTCACAAGAAAAAGTGGTGCAACTATAAAAGTTGAAAATACTCTTGAAGATTACAAAAGTCAAAAAACTTTTGGAAATTTTTCGACCCCAAAATCGGCTATTCCTGAAACACTGATAAATGGTGGATCCATCTTGGATGAATTATTAGCTAACGATTCTCCTTACAAACCGAAACGGGTTAAATCGGATTCGAACCAAAATACAAACCACGGTCAAAGATTACTAGAAAAACTTCCTAAAAGTAGAGAACAGTCATTTATAAAACAAGAACTATCTTCAAGTGTCACCACTCCGGAGCGAATATTTACAAAACAAAGAGATTCCCTCAATAACAAAAGTAGAACTCAATCACCTTTGATAAACCTTGAACCCAACACATCAATACTTGACAATATTTTAGGTATCAAGTCTCCTCGCAAACCAAATTCAAATCGCATTATACCAGATTCGCTTGATAACGAAAACAGTCCAGAAGAAAGCTTTTTCAAGAGTCCAAGGAATACTAAGAAAATTGGTAAAATAGTCCCAACATGTTTTCCCGAAAGTCCGATTCCTAGAAACCGATTCGGAACGACTAACTTGGATAAAGGTTCAATGGGAAAATATTCACCTAGTAAAAAGCTGTATGATCCAACTATCTTTTTGGAGGAAGGGAAATCGATTTTGGACGAATTATTAAACTTAGATGCGAAACCTAGAAGACGGGTTGGAACGTCTGATTCCAGAACCAGTTGCCATAGAGATGAAGACGTTATAACATCGAACTGCCATGGTAACAGAAACGTCGCCAAAGCAATGACGCCGAAAAGGACTTTGAATAAGTTGCCAAATACTACATCTATACTTGATCAGTTCTTATAG

Transcript

Protein

Uniprot

Uniprot term	Description
A3KMX0	DNA excision repair protein ERCC-6-like 2 OS=Bos taurus OX=9913 GN=ERCC6L2 PE=2 SV=4
Q9JIM3	DNA excision repair protein ERCC-6-like 2 OS=Mus musculus OX=10090 GN=Ercc6l2 PE=1 SV=3
Q5T890	DNA excision repair protein ERCC-6-like 2 OS=Homo sapiens OX=9606 GN=ERCC6L2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050496	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20098	ERCC6L2; DNA excision repair protein ERCC-6-like 2	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	deepkoala