Gene detail

Detailed information of XP_066929397.1 in Clytia hemisphaerica

Genomic Location: NW_027104280.1:1106742...1138140
NR annotation: XP_047142772.1, SMC5-SMC6 complex localization factor protein 1-like isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066929397.1

ATGTCTTCCTCACAACCTCTACCAAGTCATAAAAATGATACGTACCCCGAATCCCTGACGTTGTCCGCTCTGAAGCTTATTCCTGATACAGAATTTAAACGTACAACTACACCGACGATTAAACAAGAAGTTCTGACGCCTGATAAATCAAACACGTCTACCGATAGTGCTCCGGTGTCAGGCAACGATGTACCGACTCTTGATACTACTAGGCAATTTGTTCTTGATCTTTGCATCAAAGGAAAGACTCTGAATTGGAATCCAATCCTACCTTTGTCGACAAATTTGAAGAAGATGACATCAAAGAAAGCTTCCGGAAAGGACAAGAAGAGAGCAGTATTTTTACTCAAATGGGACAACGAAATCGAATCAAGTTTGGACGAGAAAGATTTCTACCCAGCTTTGTGTGTTCTTAAGGAAAACATGTCAGAATTCTACTATCCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCTTGAAGGATCAAACGGAGTCATTTAAACGGATGGAGTTGTTCTGTACACTACAGTGTGTGCCCATGTTACATCCAGTGAAAGATCTCACGTCAATGTATGTCCACATGTTGAAAAACCCAAAGCAAGAGAAACGTGAAGTCAAAGAAACGACCGCAATGCATGATACTTTGTTGGAAGCTGCTAGAGATGCAAGGTTGATATTAGAAGACGAAGAAACGAATTCAAGGTTGCTCTCGAGTTGCATGAAGCAAGCAGAATACATCACTAATCTTCTGCAGAATGACTTCAATGATGTCATCAAAGAAATAAGCAGCCAAGTTGACATCAAAGATACAAATCATCACTTATTGAAGAAGTTAAGGCTTTCACTGATTTACCAAACTTTATGGGGACAACGTCATGAATTGGCTTTGAACTCTACCGTCAAGGAGTTTGTGGAGATGACAGTATCGCTCTATCAAATGAAGGACAACTCGACTGAGGCTCTCCAATTACGACATATGTTCATTGGTCTTATGCGCATCATAGCCGAATGCTGTTCCGTGAAAGATAAACTTTTTACAGGCTATTATCATGGCAATGACGCAAAAAGCTTTTGTGGATATTTTACAGAATGCAGCTTGCTATTACTTAAGTCCCCTGACACACTGCACCGTATGAAAGTAATATTTTTGCGTGAGATTGGCGATACTTGGATAACGTATCGTGTATGCGAGGCCTTACTAGACCGGATGGATTCTTGCTTGGTACCGTCAAGGATAAAAGACTTGTCTGAAAAGACAATGTCCTTTGATAAAATTATATTATATTACTTTTACATGTATCCTGGAAGAGCTGTTCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGATATTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAAACCTTGTTGAAAAGATATGAGAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAATTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAAGAAATGTACCAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTTTTTACAAATACTTTTGCAACTTATTACCAGTTACCGGGAATCGAACATAGACGGCTTAAGATGCAATTTGAGCCAACTTGAAGCACAATACAATGATTTATTGATGCATGTCAAATTACTGAACGGGGATAAGATACCCCTCAAATGCAAGCTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9BQI6	SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens OX=9606 GN=SLF1 PE=1 SV=2
A6QR20	SMC5-SMC6 complex localization factor protein 1 OS=Bos taurus OX=9913 GN=SLF1 PE=2 SV=2
Q8R3P9	SMC5-SMC6 complex localization factor protein 1 OS=Mus musculus OX=10090 GN=Slf1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR042479	Family	SMC5-SMC6 complex localization factor protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46677	SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:1990166	Biological Process	protein localization to site of double-strand break	Interproscan
GO:2000781	Biological Process	positive regulation of double-strand break repair	Interproscan