Gene detail

Detailed information of XP_066929769.1 in Clytia hemisphaerica

Genomic Location: NW_027104297.1:1064589...1084534
NR annotation: AHI50305.1, vasa-2 [Nanomia bijuga]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066929769.1

ATGTTTGCTGCAATGAAATCTGGCTCCATGGCATCTTACACGCCACCTGCACCTCAACCAGTTGCACAACCAACACAATCAACCTACACAAGTTCTTCAAGTGACAATAACAGAGATGACTCAAGAAAAGCACAACTCAAAGTCTTGGGTATTCCTGAAGGAACTGATGTGGAAACATTGAAAGACTTTTTCAGTGATGTTGCCAAAGCAGTAGGAGCAAAGATTTTACCGTTGCAAGAGGGGAGGACAACTGCACTGGGATTTGTTGACTTTGAAAAAGAACAAGATGTACAAAATTGTGTCAATAGTAAAAACAATGCAATGTTTAATGGCAGTTCCCTACGTCTTTTCCCTGCAAGTGGTGGCAACAATAGCAGGCCTGGTGGTAATTCAAGCGGTGGTGACCGTCCTCAAGTCAAAGTTCTTGGAATTCCTGATGGATCTGACGAGGGACAACTTCAATCATTGTTTTCAGAAGCAGGAAATGTAACCAGAATGAATATTTTACCTTGCAGAGAGGGAAGAAATACAACTTTGGGGTTTGTTCACTACAATTCACAAGCAGAAGTTGATAAAGCTGTTTCACTCTACAATGATTACGAATTCAATGGATCTAAGCTGAGAGTTATGTCGGCAAACACCCCATCAAACGGGATCAGTGGCTCAAGTGCACCTTTATCAAATAATTTTATGAATGGCTCATCCAGTCAAAGCAGGAGCAGTAGCAGTGGGATGAAACCTCAAGCAAAAGTGTATAATATTCCTGATGGCACAACAGAGGACGAAATCACTGCCTTGTTTGGAAATGTTGGAATCTGTACAGGTTGCAAGATTTTGCCTTGTAGGGAAGGAAAAGATGTCACCCTTGGCTTTGTCCATTTTCAATCAGAGGAAGAGGTTGATAAAGCAGCTCAGATGTACCATGATTATGATTTCAAAGGTTCACGTCTCAGAGTTGAAGGTTCTGGTGGCTCTTTTCCCTCTAGACAATCTGATTCTTCACAATCTCGACCTATGGGAAGAGGAGCACAACTTCTTGCAAATGTCAACGCGATGAACGGAGGTGGTGGAGGTGATTTTCCACAAAGAAGAGAAAGAGGTCCTCAAGCGAAAGTGTTTGGAATACCAGAAGGGACCTCTCAGGATGAGTTGAAAGATTTTTTCTCTCCTGCTGGAAACGTCACGAATACAAAGGTTTTACCTCTACGTGAAGGAAAAGATACACATCTGGGGTTCATTGAGTTTTCCAACGATAGTGAAGTGCAAGCTGCTGTTGACCAGTTCGATGGACAAGATTTCAAAGGGTCTAATCTGAAAGTTATGGTTGGTCAAACTAGCGGTGGCAGCGGTGGAGGTTCAAGTTTTCAAAATAGCAGCTGGAATAGCAGTTCAATTGCACCTACGAGTAGAATCCCTAGATTCGGCGACAGATCGAATGGTGGTGGTGGTATGGACGGTGGTATTCAATTAGATGCAAATTTCGACATGAATGGTGGCATGATGGGAGATGACATGATGATGAACCGCCCTCCACCCGTCAACTACATCCCTCCTCCCCCTCCCGAAACCGAAGATGAAATCTTTCAACTGGGTATAAATGAGGGCATAAATTTTGAAAAGTATTTCAACATTCCTGTTGAAATTACAGGAACAAATGCGCCGAAACCAGTCAATAACTTTGCTGAGGCCCAACTCAACCATATTTGTTTGAAGAACTTGATTCGTGCAAAATACAGTAAACCAACGCCAGTTCAGAAGTATGCGCTCCCAACAGTTTTGTCCAGACGTGATCTGATGGCTTGTGCTCAAACTGGGTCTGGAAAAACTGCCTCATTTTTGTTACCAGTGATCACCAATTTGCTCAACGATGGAGTCACCAACCAAATGTCTTTGGAAGGTGCAGTGTTTCCTCTTGCACTAGTTATCGTTCCCACTCGTGAACTGGCTGTACAAATCTTCAGAGAGTCGATCAAATTTGCTTACGACAGTCCCGTCAGAACGCAAGTGATTTATGGAGGTGTCTCGGTAAATCACCAAACAGATGCTTTGAGACGTGGTTGTCATATTCTGGTTGCCACACCAGGTCGATTGGAAGATTTCATCCAAAGAGGAAAAATCAACTTCAAAAACTTAAAATATCTCATTTTGGACGAAGCTGACAGAATGTTGGACATGGGATTTGGTCAAGCTTTACAAAACATTATCAACACATCAGAAATGCCTCCGAAAGGTCTTCGTTCAACACTCATGTTCAGTGCAACATTCCCTAAAGAGATCCAACAGATGGCAGCTAACCTGATGAATGACTACCTTTTCTTAACTGTCGGTCGTGTTGGCGGTGCGTGTGCTGATATCCAACAGACTATCATGCAAGTTGCAGGATCCGAAAAGCGTTCCACGTTAGAAAAGTTGTTGCAAGACTCAGGAAGTGATCGTACTTTGGTATTCGTCGAACGGAAGAAAGATGCCGACTTTTTGGCGAGTTTCTTGTCGCAGAGAAACTACCCAACCACAAGTTTGAATGGTGATCGAAGTCAACAAGAACGAGAGATGGCGCTAGAGGACTTCAGGAGAGGAAAAGCTCCTGTTTTGGTCGCTACTGCTGTCGCCGCTAGAGGTTTGGATGTGAAAGACGTGAAACATGTGATCAATTACGACCTTCCATCCGACCCAACTGAGTACGTCCATCGTATCGGCCGAACCGGTCGTATCGGAAACAAAGGAAAGGCTACTTCTTTCTTCGACGTAAATCGTGATGGAAACTTAGCACGACCACTAGTCAAATATCTGTCTGAGGCCGAACAAGAAGTACCAGATTGGTTCGAGGATTTTGCTTTGCGGGCGGTCGGTACAGGTTACGGAACTGATCAGTCACAATTCCGCGACCAACGTTCTAAGTTCTCGCGAAACGGAGGCGGTGGTGGTATGGGCGGAGTGCCAACTCAAGGGAAAGTTGTGTCATTGGCTAACACAGCAGATGACGATGATGAAGAATGGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O00571	ATP-dependent RNA helicase DDX3X OS=Homo sapiens OX=9606 GN=DDX3X PE=1 SV=3
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q62167	ATP-dependent RNA helicase DDX3X OS=Mus musculus OX=10090 GN=Ddx3x PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007276	Biological Process	gamete generation	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13982	DDX4, VASA; probable ATP-dependent RNA helicase DDX4	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala