Gene detail

Detailed information of XP_066930605.1 in Clytia hemisphaerica

Genomic Location: NW_027104356.1:556626...579475
NR annotation: XP_047138607.1, RAS guanyl-releasing protein 2-A-like isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066930605.1

ATGGAGGCAGATACTATTTTATATGAAGAGGAGCCTTTTCATGGCGTTTCCATCAAGGCTGCTTCCATTGACCAATTAGTAGATCTGACACTAAGAAATTTTGATGAAGAACATCGAACATTTGAAAGTGAACGATTTGTTTACGTTTTCTTCCACACTTATCATTGGTACCTAACAACACATGAACTTCTTCGCCATTTCATTGACAGATATGAAAATATTTCAAAGACAGGCGACAACCATGGCTTAGTTCAAATTGAAGATGCCGTAAGGTACTGGTTAAACCACTTTGGATGTGATTTTGACAAGAACGAGAATGCTTTGAACATTTTAAACACGTTGAATAGTAAAATTCTTTCACGTCAAAGTAATGGAACAATCCCTGTGGAATTGACCCTTGAAGAATGGCACCGTCGTCGGAAAGCTGGCAAGCCTCCTTACCTCAATGCAGACATGAGACGACCTTCTTTGAATTTTGATGAACTCCCTACCAAAGATATAGCAAAGCAAATGGTCCACCTATGTTGGAAAGGTGTCAAAAAAGTGCCTGTCTACGAATGGATGAAGTATGGGAAATCAGCAAAAACGAAGGAAACGCCTTCACTGAAAGACCAAATCATTTTGTTCAATGACATTTCCAAATATGTTGTAGCAATGATCTTGAATCGGGAATCGGCGTCCGATCGCGCTAAATCCATCTCCAAATTCATTGAAATGTCTAAGTATTTCGTCGAACTGAACGATTACAATACTCTGCTAGCAGTTATTGGAGGACTGGGTCATAGCGCTCTAACGAGGCTACAGAAAACGAAAGAATTGTTGTCGAATGCTGATAAATTGTTCATTAAAGAAACAAATGAATTGCTGTCATCCAATCACAATTATACGAAATACAGAAACCAAGTAGCTGAAGTTGATGGATATGTTATGCCTATATTAGGTGTCATCATGAAGGATCTTGTTGCCTTGGAAACAGCCATCAAAGATCACGTGGAACACAATGACGTTAAGTTGATAAATTTTCACAAAATGGTGCAAGTGTCTGATATTCTGAATAAAGTGACCGGATTACGGGATACATCACCCGATGTCGTTCCGGATAAAGAATTATCTAATATCATGAGGCTTTCGTTGAAGTCACGGTATTCGGAAGATGATTTATACGAGCTATCCGCCCAACGTGAACCAAGATCTACGCATAAACAATCAACGAGTATTTCACCGGGACTGGAGCGACCAGACTTTGCAGATTGGGCTGCAGGGATCACTCCAGAGACACCAGATCGTGCTACTGTTGAAAAATATATCTTGAACATGGTAGAGGCGGTTTTCAAGACGTACGACGTCGATAAAAATGGGTCGATAAACAAGGAAGAATTTGACCAACTTGCCACCAATTTCCCATTCATTGATAATTTTGCTGTTCTTGATGTTAATTGTGATGGTGACATTAGTCGGCAAGAGATGGTGAATTATTTCATGAATGCAAACTCGCAAGAAATGACGAAAGAGTTTTTACACGAATTCCAGGAGCATGCTTTTTACTCGCCGACGTATTGTGTCTATTGTATGGGGTTTTTATGGGGTATCGGCAAATCAGGCTACCGATGCAAAGTTTGTCAAATCGTCTGTCACAAAGATTGCAAGAATCATGTTGTGATGGAATGTCGACCTCAACGATCATTCTCTATGAGAGATCCAAAGAAGTCTTTGAAGAAGCGAATGAACCACGATTCTTCATGGCAAGGATCCACAGATTCTGTGGTCAACGAATCATTGGATTCCACTACTATCAGTCGATTCTCCGATAGCTCTGTCGATTTCTCAGATGCGTTGATCATCGAACGACTGAAAGAAAGAATCACCAGACTTGAAGTCGAAAAAATCGAAATGAAGAAAGAGAATTCGACGTTGAAAACGAAACTGAACACAGCTGAGAAACAAGTCGAATCTTTGCAATCACAACTAGAACAGATTCGTCCTCTCTCCGTCAAATTCATGCTCGACCAACTGGAACGATTGAGCACGTGTAAGGAGACGGATCTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8IV61	Ras guanyl-releasing protein 3 OS=Homo sapiens OX=9606 GN=RASGRP3 PE=1 SV=1
O95267	RAS guanyl-releasing protein 1 OS=Homo sapiens OX=9606 GN=RASGRP1 PE=1 SV=2
Q9R1K8	RAS guanyl-releasing protein 1 OS=Rattus norvegicus OX=10116 GN=Rasgrp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF00130	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR002219	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR020454	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12362	RASGRP3; RAS guanyl-releasing protein 3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala