Gene detail

Detailed information of XP_066930823.1 in Clytia hemisphaerica

Genomic Location: NW_027104364.1:310750...323048
NR annotation: XP_012557073.1, host cell factor 2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066930823.1

ATGGCTGCTTCTATGAAGTGGAAATGCGTCAAGGAACCGTCGGGGCCTTCTCCGAAACCACGGCACGGCCACCGAGCGGTTGCGATTCGTGATTTGATTGTCATTTTTGGTGGTGGTAATGAAGGCATTGTTGAAGAGCTCCATGTATATAACACTGCCACAAATCAATGGTTTGTGCCAGCAGTTCAGGGAGATATACCACCTGGTTGTGCAGCCTTTGGTTTCGTTTGCGATGGAACTCGTCTTTTGATATTTGGTGGGATGGTTGAATATGGAAGATACTCAAACGAGCTTTATGAGTTGCAAGCAAGCAGATGGGAATGGAAGCATCTTCATCCTAAAGCACCTGCAAATAATATAACACCATGTGCTCGGCTTGGTCACAGTTTCACACTTGTTGGTAAAAGAGTATTTCTTTTTGGTGGACTTGCAAACGACAGTGAAGATCCAAGAAGTAATATTCCAAGATATCTGAATGATCTCTATACATTGGATCTCAGTCAACATGATAATCTTCAGTGGGATGTTCCTTGTACTTATGGTCAGCCTCCAACACCGAGAGAATCTCATTCTGCTGTTCTTCATACAGCTGAAAATGGTAAACATCCTAGACTGTTCATTTATGGTGGAATGAGTGGCTGTCGTCTTGGTGATGTTTATATCCTAGATGTTGAAAAAATGTTATGGTCGAAACCTGTGATTCACGGTATTGCTCCCTTACCAAGAAGTTTACATACTGCTGTTATGATTGGTAAACGTATGTTTGTTTTTGGTGGATGGGTGCCTCTCATCGTTGAAGACGGTCGTTCAAGTCATGAAAAAGAATGGAAATGCACAAACACCTTAGCCTGTTTGAATGTTGAAAAACTCAGATGGGAGACAATCAATGTAGAAGGAGCTGATGACCAGATGCCAAAACCAAGAGCTGGTCATGCAGCTGTAAATGTCCATACACGAATGTATATCTGGAGTGGTCGAGATGGTTATAGAAGAGCATGGAACAACCAAGTTGAAAATGTTTGTTGCAAAGACCTTTGGTTTTTGGAAACAGAACGCCCACCAGCACCTTCTCGTGTGCAACTTGTCAGAGCTACAACAACAACGCTTGAAGTATGCTGGGGTACAATACCAACAGCCGACGCTTACATCATTCAAATACAAAAATACGAAGTGAACCCCACTCCCACAACCTCTACAACCACAAACAACACAGCCAACAACTCAACCACAGCGAAACCAATAACCAGCAGTACTGCCACAACAAATACCACACAACTACTCTCGAATGCAAATATCATTCGACTTCCCAGCACTGGACAATCTCTGGCATCAACTCTTACCAATCTTTCATCGGTCACTTCTCTAGCTGGTGTCTCTAAAACTCTTGGTATTCTTGGAACCAACACTAAAACAAACATCAAAATGGCCATCACTCAAGCAGCCTCAGGGGCAAACAAGACAGCTAACATTGTTACCAGTCCCAAAGCTGTCACTCAAAGTCTCCTCCAACTTGGAGGGCAAATGAAAAACCAACACATCACTTTAGCAGCTTTGAACCAACTCACTGCTGGCAAGATTGCAGTGAGCACTGCAGGTGGCAAAACTGTTCAAATTATTTCACCCGCTAAAGGTCAGGCTATCAAACAACAGATCACTGGAAAGCCAGGAGTAAACACCCCTATTCTAACTGCTACCTCCTCGGCCAGTACAGCTGGTCAGACCATCAAAGTGGTATCATCTGGAGCCACTGCAACCTCGACCCCTTCGACACAGTATGCTTTGGTTCGTGCACAGCTTCCAAGCACAAGTGGTGGCCCAGCTCAAACAGTGACCTTCATTCGTGCTATTGGACCAAACAGCTCTACCTCGACTGGAAATACAACCGTTTCAGTCACCCCACAACAGATGGCTGCACTGTTAAAAGGACAACAAAACGGAGGTCAAAGTCAAATCCAAAAGGTGCTGGGAGCCGCTACGGGAACAGCTCAGATTCGCGCTCAAAACCCGATAAATGTTGCAAGCTCTCTTAAACTAGCCGCTCAAAACAGTCCATCTAAATTGGTCTCTGTACAAATTCCACAAAAAACAGGCGGTGTCACTCAAATGAAAACAGTGTCAGTTGGCTCTATCTTAGGTAGCAAAGTCAGCACAGTGACAACTCAAGCAACTAATGTCTCGCCCATGGCTACTCTCGTATCTGGTGTTTCTGCTGCCAAAACCACTACAGGATCATCGTTAGTCAACCAGTTTCCAGCAGTTCGTCCGGCTGCTATCGCAGCTCTCACAAAAACGACGACCATGACCCCAACAACAACCACGAACACCGACGCCGTCACATCAACAACGGCACCTTTGACGGAAACTAGTGAACAGAAACCGGCAGAAGTAACAAAAGTCGATTCTACAACCAACGAAGCTGGTGAAATCAAAGAAGAACAAGACGACGTTTCCAATCTGCTGAAATCAACTGAATCACTCGATATGCCCATATCGACAACAGATATCAAGGAAGAGCCAAAAGATGAAGATGTATTGAAAACGACCGCAGGTATTGGAACAATTGATAAAGATGAACTTCCTACTGAAGTCCCGATGGAGGAAGCACCACCAAAAACTGACCTCACTGAAACCAAAGACGAAGTATCTAGTTCCACAGAGGGAGCTGAACCTACCGATACCAAAATGGAAGTTGACCAGGACGAAAAACCACCTACAAACCCAACAGAAAACTGTGGCGAAGCTGAAGTCAAACAAGAACAACCAGACCAATCATCGGAATCTGTGGCCGCATCCACTCTAGCGCAACTTGCGTCCATTGCCAGTGATGGCGGAAACACTGGGGCGGTGACGACACCCATCACTGATATGAATAATCCACTATCAACGTTGGCAGCGCTTGCTTCTTCATCGCCTATCGCTACAGCTCCTGTCGTGAATGGTTCTTCGAAAGCCATCAGTGTTGCAGCAGCTGCTAAAAAGATCGTTCGTGGTAAAGGTCCAGATGGAATCAAAAAGAACCCGGCACCGTGGTATGATGTGGCCATGACAACCAATACATCAATTGTCGTTTCGCACTACTATGTTCCTGTAGAAGCTGGCGATGATAACCACGACAACGTTGTTCCGGAAGGACAGTACAAAGGCATGAGGAAAGTTGAATTACAACCTGGAACCGCTTTCAAATTCCGTGTTGCGGGTATCAATGTTTGTGGGCGTGGTTTGTACAGTGATATTGCTGCTTTTAAAACGTGTGTCCCAGGTTTCCCTGGTGCTCCGTGTTCAATCAAAATCACCAAGAATGATGTGGGTGCACATTTATCATGGGAGCCTCCAACTAATAGTGCTGGGAAAATCCTCGAATACGCCGTCTACCTTGCTGTGGATAACAAGAAAGGCAAAGAAGTGACACAAACACAGCTGACATTCGTCCGTGTGTACTGTGGCTCAACCTCCTCGTGCACTGTGACCTCTGAAACCCTGAAGAGTGCTCATATCGATTTCACAACGAAACCCGCTATCATTTTCCGTATCGCTGCTAAAAACGAGAAAGGCTATGGACCTGCAACCCAAGTCAGGTGGCTTCAAGATTTGAAAGACCTTCCTGAGAATAAACTGAAGCGAATGGCAGAAGCCAGGAATGATGCTGCAAAGCGTGCCAAGCTATCGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9V4C8	Host cell factor OS=Drosophila melanogaster OX=7227 GN=Hcf PE=1 SV=2
D3ZN95	Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1
Q61191	Host cell factor 1 OS=Mus musculus OX=10090 GN=Hcfc1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR043536	Family	Host cell factor	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003	HOST CELL FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097	Cellular Component	histone methyltransferase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14966	HCFC1; host cell factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala