Gene detail

Detailed information of XP_066931260.1 in Clytia hemisphaerica

Genomic Location: NW_027104377.1:64395...84266
NR annotation: XP_002167197.2, hypoxia-inducible factor 1-alpha isoform X1 [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9YIB9	Hypoxia-inducible factor 1-alpha OS=Gallus gallus OX=9031 GN=HIF1A PE=2 SV=2
Q98SW2	Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss OX=8022 GN=hif1a PE=2 SV=1
Q0PGG7	Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan
PF00989	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08268	HIF1A; hypoxia-inducible factor 1 alpha	-	Transcription factors	ko03000	deepkoala