Gene detail

Detailed information of XP_066932842.1 in Clytia hemisphaerica

Genomic Location: NW_027104429.1:452446...459518
NR annotation: XP_047126289.1, RNA-binding protein 26 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066932842.1

ATGATAATTGAAAGTGTGGATTCATTGAAAACATGGCTCGTCAAAGAATTGGAACCAATTTGTGATGCTGACCCTGCAGCATTGGCAAAATATGTTATTGCTTTGGTAAAAAAGGAGAAGTCAGAAGCTGACCTCAAAGCTCTGTGTGAAGATCAGCTTGATGTATTCCTTGGAGAAGAAACCAGACAATTTGTTGGTAATCTATTTAAGGCACTGGGAGATAACTCCTATCTCCCTCCTGCACCACTGCTCACCCAACCCACTGTTGAGGAGCCCATCAAAGAGGTGGAACAGAAAGGTACCAAGCGCAAATCTTTTGAAGAAACACCAAAAGATGACTTTGAGAAACTTGCTAAAACTGAAAAGAACACTGATGTTGGTAAAGTTGTCAGTGATAAAGAAAACATAGACAATGTAGATAACAGTAACAACGACGGAAGTAAAAACGAAAATAATATTTCGGAAGGGAATGCAACAGAAAATAATAGACTTCAAGTTGAGAGAAGTGATGATGTGCGCATGCGTAGTGTATCTAAAGATCGCTCAATGAAGAGTATGTCACCAAGAGCTCGACATCGAACTCGTCGCTCGTCACGATCACCCAACAGGAGCAGCCGACATTCTAGACACATGCCAAGTGGTAGTGGTAGTAGTAGGAGCACACGTAGTGACAAATCACGAGATTCGCGAAGCAACAGAGATAATGGTAGAAGAACCAAATCAAGCCGAAGAGAGGCAACTAGAGAAAGATGCAGAGACTACGAAGAGAAGGGATATTGTATGCTTGGCGAGACATGCCGTTTTGATCATGGACGCGATCCTGTGGAGGTGGACGATCGCAATCTTCCACATATGCTTTCCCTAGCCACTGCAAATACCTTCCCTCCTTCCTCTCAACCCAACAACGCAGCTACCATGGCAAACCCATCTGTCCCAGTCTTCCAAAATGTCATTGGTCAACGCCCAATGGTGCCACCTATAGGAACGGCCAATCTCAACACCTCTCTGACAACAGTGCAAGTTCAAAACACGCGACCCTCGCCCGTTGAGATTAACACGCAAGTCCCTATCTTTCGACCACGCAACCCAATGGCTTTGTTCAGAAATATTTCTCCAACAGGTGTTCCACCAGCGATTCCAGGTCAACCAACACCACCACAAGCGGCTATTCCACACCAACAACCACCCATCAGTGAAACGTACAACCCTGAACAACCTTCTATTCTTGAAACGGATGAAGTGCTGAAAGAAACCAAGATCTCTGTTGACAAAGTGAAAGAAGACGCAGATCGTTCACAAGACGAGCTCGTCCAAATCGCGATGGGAAACGTCCCGCTCACACCTATCCTCGGCCAACAACCGACATTTCCAATCAACGGCGCTCAAACTATGAACTTTCCTGATCTGATACAACCTCAGCATATCATGCGACCTGCAGAGCCCATGAAACAGGTGGTCCGAGTGACTGGCAACAAACCTTATCACGGTGGTAAGAACACCTGCTTGGAGATTCGAAAGATTCCAGGAGAACTTAACAACATGGTCAAGTTAAGCGAACATTTCCAAAAATTTGGTACCATCACCAAATTACAGAGTCCATTCGATGCAGACCCTCAAGGAGCTTTGATTGAGTTTGCGACAAATCGTGAAGCTTATGCTGCTTATAGTTCGCCTGAAGCTATCCTTGGCAATCGGTTCATCAAGATGTTCTGGCATAAACCGGCAAAAGACGCAAATAACCCTCACAACGGTGGTAAAGATAATGTTCGAGGTATAGGAGCAACATCTACTACAAGTGAAATCAAAACGGAAACATCTGCACCCTTACCTCCACCAGAACCAAAGAAAGTGGCAAAAGCTGGTGAATTATATTTCCGAAACCCTAAATCCGATCCTAAACTCATTCAAATGGAGAAGAAAAAGGAACTCGAACAATTGAAGAATGAACTGAGGAAGAAAAAGCAAAAAAGTTATGAAGATTTGGTTGAAAAACAGAAACAAATCTTGAGCAAACTTCAAGAAAAAGGACTTTCTAAAGAAGAAAAAACCAAACTGATGAAAACTTTCAGTACTTGTGATACAACTATTAAGAAGCTGAAACATGAAATTCAAAGAAGAAACTGTCCAAGCAAGGGCTGCACAAAATCTTCATCAAGCCAAACCGTACAAAAATACGAAGAAAGAGATTCTTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5T8P6	RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3
Q6NZN0	RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2
Q2T9I5	RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF01480	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR045137	Family	RNA-binding protein 26/27	Interproscan
IPR002483	Domain	PWI domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14398	RNA RECOGNITION RRM/RNP DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13192	RBM26; RNA-binding protein 26	-	Spliceosome	ko03041	deepkoala