Gene detail

Detailed information of XP_066934843.1 in Clytia hemisphaerica

Genomic Location: NW_027104534.1:422916...439817
NR annotation: XP_047128404.1, translocation protein SEC63 homolog [Hydra vulgaris]
Species abbreviation CHEMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_066934843.1

ATGGCAGGAATGAAATTTGAGTACGATGAAAAGGGAACAACATTTTATTACTTTATTCTTTCATTTTGTGCTATATTCTTGATCCCAACAACCTATTATTTATTCCCCGATGATTCAAAGAAAAAGAAGACAGAAGATGATACAAATGAAAAGAGGAAGCCATGTTACTGTCCTCCATGTATGGCAAAACAGGATTTGATTGTCAAAAAAATTCCTAAGAAAAAAATATACCTTATACGAGCAGTGCTAATAATCTTGTGGGCATTATTGATCACTGGAGTTGTCAAAGTATCACAATTTGAAAAAGAATATAGTGAATATAATCCTTATGACATCTTACAGATAGAAGTTGGTGCTACCCAAGCAGAAATTAGGAAGAAATACAGAGATCTCAGTAAGCTGAACCATCCTGACAAAGGAGGAGATGCTGTTGTTTTCATGAAGATTTCGAAAGCTTATCAAGCTCTAACAGATGAAGAAACTAAAAAGAATTGGGAAGACTATGGCAATCCTGATGGGCCAGGAGCAACACAGTTTGGCATTGCTCTACCATCTTGGATTGTCGATAAGAAGAACTCAATGTGGGTTCTTGGGGCATACATGCTTGCTTTCATCATTATACTGCCAATAGTTGTGGGCTCATGGTGGTATCGTTCTATACAATACAGTGCAGAAGAAGTTTTACTTGATACAGAACAATTATTTTGGTATTTTCTTCATCGGACACCTAACATGTCACTAAAACGTGCAATAATGATACTCGCTGGTGCATTAGAATTTGATAAAAGTCACAATGCAGAAGTACAGGAAAGACCAAGTGACAATGTTGAACTTCCACAGCTAATGAGAGAGTTACCACAGCTGAACGAGAAGAATAAAGAACGACCTCTATGTTTTGCATACAGTATCAAAGCAAGAGCTCTTATGCATGCTCATTTCTCCAGGATAGCTTTACCACAACAAACACTATTAAAAGATTTAGAATTAATTTTGAAGAAATCACCAACGTTAGTACGTGAGATGATTAATATCGTTGGCCAGTTGATGTATTTAGCCAAAATGGGAAGAGTATCTCAACCTCCAAAACTTGAAACTATGGAGAATTTAATGAAATTGAGTCAGATGCTGATACAAGGAGTTTGGGAATCTAAATCGACATTTCAGATGTTACCTCACATTTCACAAGAAAACCTACGTCATTTCAATACTAAAAAGAGGAAAATAAAGACGATTCGACAGTTTGTTGGGATGAATAACACTGACCGAAGGATGCTTTTGCGGACGTTATCGGACGAACAATATCAAGATGTATTAAATGTGTGTTCTTCTTTCCCTCATCTTGAAATTGAGGCTACAACTAGAGTCATCGATGACGAAGATATGGAAACTGTGACAGTAGGTTCCACTGTCACTGCACTGGTCACACTCACAAGAAAAACTATGGAAGAGTTCTTTGGTGATGAAAGTGAAGAAGTGTCTTTGAATAATATCGAAAATAACGATGACGCTACAGCATCACCGAAGCCAGTCAAAGGTTGGCAACGTAAAGTAAAGAAAGGGAAAGGAGCTAAGAAGCCAGTCAAAAAGCAACCTGTCAAAAAGAAGAAAAAAGAGGATGAGAAACAAGAAGACAAAACAGAAAACAAAGAAGAAAAAGATGAGGAAGCTGATGAAGAATCTTATGACGGCGTGGAAAATATGGATAGCGAAGATGAGAATGCAGCCGATGATGAGGCGGACGAACAAGCAGACGAAGCGGATGACAAAAAGGATGAAGAAGATGATGATGAGGATGAAGGAAATATGGTCGAAAGAGACGATGGGGCGGATGATGAATGGTCCAGTATAAAAGATGATATGATGCAACCTGATCGTCTCTTAGATGCCAAATCCAAAGAAAGTCATATCGTTCATTGTCCTTACTATCCAATGGAAAAACACGAATATTGGTGGGTATACTTGATCAATAAGAAGAATAATCAATTAGTCACAGCTCCACAGCAAGTCACCAATCTCAAAGTTACTGAAAAGGTGCAATTGAAATTCTCAGCGCCAGAGAAACCAGGCATTTATCAATACATTGTGGTGGTCAAGTCAGATTCTTATGTTGATTTCGATATGACTAAACCTCTAAAAGTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGGAGAGCATTGGAATTATTCGAGTGAAGATGACGATAAAGATGATTCCGGTGAAAGCGTTTACGAAACTGAAGAAGAAGATGATGATGATGACGATGAGGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHE0	Translocation protein SEC63 homolog OS=Mus musculus OX=10090 GN=Sec63 PE=1 SV=4
Q9UGP8	Translocation protein SEC63 homolog OS=Homo sapiens OX=9606 GN=SEC63 PE=1 SV=2
Q5R660	Translocation protein SEC63 homolog OS=Pongo abelii OX=9601 GN=SEC63 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005844 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075 all species →	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0006620 all species →	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0031207 all species →	Cellular Component	Sec62/Sec63 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09540	SEC63, DNAJC23; translocation protein SEC63	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.