Gene detail

Detailed information of XP_066935893.1 in Clytia hemisphaerica

Genomic Location: NW_027104590.1:248716...267879
NR annotation: XP_047145968.1, histidine ammonia-lyase isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066935893.1

ATGAAAGATTCTCCTAATAGAAAACTATCTAGAACATCAACGACAGTGTTAACAGGTAAAATGAAGTTAACGGTACATTACAAAGGACAGATATACGTTGTTCCATGTGGTAATGGTAATGATACTATAAAATGGCTGAAAGAAGAAGCTGTTAAACGATCAAAGAAATTGAATTCAACTCTGGAACATAGTTCTTTAGACACTTTAGAAGCTCGTTTACAAGAAACACATGGATTATTAATGGACGATGATTTGGTATGTGATGTTTTGGATGATAATTCTCTCGTATACATTTCAAGTACAGACGAAAAGACAAACGGAGAAATTAAAATAAACGGATCCCGACAGGATGATGACATTTTTACACCACCACAAAAAATATTGAATATTGACGGCAATACATTGACCTCCGACAATCTCGTCAAATGTGGCAAAGGAGAATACAAATTACAGCTAACGAAGGAATCGCAACAGAAAGTGAAAAATGCGCGTGACCTTATCGATAATATTGTGGCTGAAAAGCGAGTTGTTTATGGCATCAACACAGGGTTTGGAAGTTTCGCAAGAGTCATTATTCCACCTGAAAAGATAAAGGAATTGCAAGAAAACTTAATTCGCTCACATGCATCAGGCGTGGGAGAAGCTTTAACATTACAGAGAGCTCGATCTTTACTAGCTCTGCGTATCAATGTTTTGGCTAAAGGACACAGCGGTATTTCACCAGAGAATCTGAATAAGATGATTGCCATTTTTAATGCTGGCTGTGCACCATATGTTCCAGAGCGTGGTACTGTGGGAGCCAGCGGTGATTTGGCGCCACTTTCACACGTGGCACTTGGTTTGATGGGGGAGGGAAAAATGTGGGGCCCGAAAACTGGATGGGCCGATGCAGCCATTGTTCTCAATATTCACAACTTGAAACCGATCTCATTACAAGCGAAAGAGGGACTTGCACTTATCAACGGCACACAGCTGATCACTGCACTTGGGGCTGAAGCATTGGAGCGATCTATTCGTATTTCTCGACAAGCTGATGTTGTAGCAGCTCTCACGTTAGAAGTTCTCAAAGGGACATCCAAAGCTTTCTCTGAAGAAATCCATAACGCCCGTCCACACTGCGGTCAAAAACTTGTCGCGTCACGATTACGATCACTTTTACATTCAGATGTTTATCGTTCAGAAGTTGCAGAAAGCCATCGATTCTGTGACCGAGTACAAGATGCATACACGCTTCGTTGCTGTCCCCAGGTTCATGGAGTTGTCCACGATACAATCGAGTTTGTCAAAAGTATTATTTCGGTTGAACTAAACAGTGCTACTGACAACCCTATGGTATTTGCAGATATTGGTGAAACAATGTCAGGAGGGAACTTTCACGGTGAATATCCAGCCAAATCACTTGATTACCTCGCTATTGGTATTCATGAGTTAGCTAACATGAGTGAGAGAAGGATCGAGCGACTTATCAACCCAGCTTACAGCGGCCTTCCAGCATTCCTTACGAAAGAAGGAGGATTAAACTCAGGTTTAATGATTGCCCATTGCACTGCAGCTGCTTTGGTGTCCGAAAATAAAGTGCTGACTCATCCAGCATCCGTTGACTCCATCTCCACATCTGCCGGACAGGAAGATCATGTATCCATGGGAGGTTTCTCCGCGCGGAAAGCTTTAACCGTTGTAGAACATGTTGAATATGTTCTGGCCATCGAATTGTTATCAGCATGTCAAGGCATTCAATTCTTACGTCCACTAAAAAGCACTGAACCTTTAGAAGCTGTTTACCGATTGGTTCGCTCGGTCGCCAAGAACTTCAACCATGATCGATACATTGCACCAGACATTGAAGCCGTTCGAGATCTCTTACATAAAAACCTGATATGGGAAGCAGTGGAACCTTACATGAAAAAATATGAAGAAGAAATGCATGCGAAAAAGATGGCCGGTATACTCAGTAGAATGCCTGATTCACCAACTGGATATAGCAGCCGTCCGGCGTCGCCAAAATCTTGGTGTGGCGAAAATGGAGGTGCGCCGCAACAGAAAAGACCAAAATATGACGCAGAGGTTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
A7YWP4	Histidine ammonia-lyase OS=Bos taurus OX=9913 GN=HAL PE=2 SV=1
P42357	Histidine ammonia-lyase OS=Homo sapiens OX=9606 GN=HAL PE=1 SV=1
P35492	Histidine ammonia-lyase OS=Mus musculus OX=10090 GN=Hal PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12053	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan
PF00221	Lyase_aromatic	Aromatic amino acid lyase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005921	Family	Histidine ammonia-lyase	Interproscan
IPR021922	Domain	Par3/HAL, N-terminal	Interproscan
IPR001106	Family	Aromatic amino acid lyase	Interproscan
IPR022313	Active_site	Phenylalanine/histidine ammonia-lyases, active site	Interproscan
IPR008948	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR024083	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10362	HISTIDINE AMMONIA-LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004397	Molecular Function	histidine ammonia-lyase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006548	Biological Process	L-histidine catabolic process	Interproscan
GO:0016841	Molecular Function	ammonia-lyase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01745	hutH, HAL; histidine ammonia-lyase	EC:4.3.1.3	Histidine metabolism	ko00340	deepkoala