Gene detail

Detailed information of XP_066936147.1 in Clytia hemisphaerica

Genomic Location: NW_027104594.1:1909207...1912998
NR annotation: KAI0221969.1, hypothetical protein LSAT2_026774 [Lamellibrachia satsuma]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066936147.1

ATGATTCTCTCGCGACTGCTGCTCACTGCTATGTTATCCTGGCAACTAACTGAATGTCAGATATCTTTGAACCAAGCAAACTCATTGCTTTGCTGCAAAGTTCTCTCTAAAAATGAAATCTCGCTGTTTTCCTTTGCTATTACTTATCAGGAAAATCGATACCACCCATGCAAGACGAAAACAAGTGCCATATTACAGCAGATGCTATTAATCATTAGTGGTACTGTCGAACTCAACCCTGGCCCATCACAGAAGTTGAAATATCCCTGTGGTGAATGTCAAAAGGCAGTTTCTTCTGGTGCTTCTATCGCTTGTGACCTCTGTAACCAGTGGTTTCACCTTAAATGTACCAACATGGATGATCAAATCTATCAATGCCACATCCAAGAGGAGAGTTTAGAATGGCTTTGTCCAAGTTGTGCTTTAGCAGACATCTCTTATAGTCTATTCGATACCTCAATCTCGTCCTGCAGCTCAACCTCTACCAACGATATCACACCCGAGAAAAAGAAAGTCAAGCATCTACGTGTCGTTGTGTGCAATTTTCAAAGTATCTGGAACAAAAAACTTCTGCTTGGAAACTATTTACATAAAAACGACATAGACGTTCTAATTGGCTCTGAAACTCACTTGTCTTGCAACATTAGCAACTCTCAATTCCTTCCAAAGCATTACCTCGCCATTCGAAAGGATCGCATAGATGGAAAAGGAGGAGTAATCGTCATCCACAAAGATAACCTCCTAGTTCAAGAACTTCCGCAGCAAAAATCTGAAATTGTATCAATTAAAATAGAATCCTATGAGAAGCCAGTAATTCTCACAGCCTGCTACAGACCCCCATCAAGTGATGCTTCTTACAACATTCAGTTAATTAAAGATATTTCCAACACTGTGAAAAAGTATAAACTGAACCCGCACTGGATTTGTGGAGACTTCAACCTTCCAGACATAGACTGGGAATCTAACACTATTGTCAGAAGCCAATACTCAAAACAATTAAACGAAGATTTCCTTGAAGCCTTCGATGCTCTAAATCTCAATCAGCTTGTTGACTTCACAACTCGGAAAAAAGCCATACTTGACCTAATTCTAACGAACCGACCTGGTCTTACTAACAAATGTGAGCCGTATGAAGGATTTGGTGACCATGAGACAGCTGTTATTGCTGATGTTTTCTGCCATCCCCAAAAATCGAAACCTATCCAACGCAAGATCTATGTTTGGCATCGGGCAAATATAGAAGGCCTTCAAAAGGATATGACTGAAGGTATACAAAACTTCTGCACAACAAACACTACAGAAACAGACATCGATAATGTTGGGAAACGTTCAAGCAAATTATCTCGAATGCGCAGGACAAACATGTACCAACAAAGACCACATCTCAGCGTTTCAATCAACCCTGGTTTAACAACAGACATTTGTGGTTTATCACCTCTCTTGGGTGAAAACAACGAAATCCATACCAAAGAGGAGGAACTAGCAGAGATTCTAAATAACCAATTCACAAGTGTCTTCACAGAAGATGATGGTACAACCCCAACACCATTAGGCCCTAAAGGAAAAAAGATCAATGACATCATTGTTACCAAAAACGGAGTCGTAAAACTACTTAACGAATTGAATCCCTTTAAAGCTAGCGGTCCTGACGGAATCGGAGCCCGTATTCTAAAGGAATCAGCTGACCAAGTTGCTGACGGTCTCACCCTATTATTCAATGCATCATTAAAGCAAGGGAAAATACCCACTGATTGGAAACATGCTGTAGTCAGTCCAATCTTCAAAGGAGGAAACAAAAATAGGTCCAAAGCAGAAAATTATCGACCGATTAGCTTGACGTCTGTCACCTGCAAAGTTTTAGAACACATCGTTCATAGCCACATCATCAACCACCTCGAGGAGAACAGCTGTCTTACAGATACTCAACATGGCTTTCGCAAGAAAAGATCGTGCGAGACCCAATTGCTTCAAACCATTGATACCCTCGCTAGAGCTATCAACAACAAAGAACAAGTTGACAGTATTTTACTTGATTTCAGTAAAGCCTTCGATAAGAATTTGCGAGATTAG

Transcript

Protein

Uniprot

Uniprot term	Description
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan