Gene detail

Detailed information of XP_066936282.1 in Clytia hemisphaerica

Genomic Location: NW_027104594.1:2874652...2894911
NR annotation: XP_047130780.1, guanine nucleotide-binding protein G(o) subunit alpha isoform X1 [Hydra vulgaris]
Species Clytia hemisphaerica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10825	Guanine nucleotide-binding protein G(o) subunit alpha OS=Xenopus laevis OX=8355 GN=gna0 PE=2 SV=5
P38404	Guanine nucleotide-binding protein G(o) subunit alpha OS=Locusta migratoria OX=7004 PE=3 SV=1
P51875	Guanine nucleotide-binding protein G(o) subunit alpha OS=Caenorhabditis elegans OX=6239 GN=goa-1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000689 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00503 all species →	G-alpha	G-protein alpha subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001019 all species →	Family	Guanine nucleotide binding protein (G-protein), alpha subunit	Interproscan
IPR011025 all species →	Homologous_superfamily	G protein alpha subunit, helical insertion	Interproscan
IPR001408 all species →	Family	G-protein alpha subunit, group I	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10218 all species →	GTP-BINDING PROTEIN ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0019001 all species →	Molecular Function	guanyl nucleotide binding	Interproscan
GO:0031683 all species →	Molecular Function	G-protein beta/gamma-subunit complex binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0007188 all species →	Biological Process	adenylate cyclase-modulating G protein-coupled receptor signaling pathway	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_066936282.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_066936282.1 across 40 RNA-seq samples of Clytia hemisphaerica. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

40Samples

40TPM > 0

16Conditions

327.6Max TPM

83.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mature medusa	5	5	71.04	79.90
medusa · Experiment Condition A1	4	4	44.93	47.48
medusa · Experiment Condition A2	4	4	43.22	48.45
medusa · Experiment Condition A3	4	4	29.74	30.38
Early gastrula	2	2	304.43	327.61
Planula 24hpf	2	2	211.66	215.87
Planula 48hpf	2	2	121.34	133.25
Planula 72hpf	2	2	98.30	111.93
Primary polyp	2	2	67.12	70.60
Gastrozooid	2	2	62.95	70.24
Gonozooid	2	2	97.81	101.68
Stolon	2	2	80.44	88.96
Baby medusa	2	2	74.99	77.09
medusa · Experiment Condition B1	2	2	50.16	54.44
medusa · Experiment Condition B2	2	2	51.87	53.31
Mixed	1	1	72.22	72.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
ERR2816249	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	79.90
ERR2816251	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	78.48
ERR2816248	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	70.82
ERR2862245	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	64.64
ERR2816250	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	61.37
ERR3299476	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	47.48
ERR3299475	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	46.47
ERR3299477	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	44.01
ERR3299478	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	41.78
ERR3299479	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	48.45
ERR3299480	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	45.10
ERR3299482	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	40.88
ERR3299481	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	38.43
ERR3299485	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	30.38
ERR3299484	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	30.33
ERR3299483	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	29.94
ERR3299486	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	28.31
ERR2816230	Early gastrula	not recorded	Early gastrula	not recorded	ERP110164	327.61
ERR2816231	Early gastrula	not recorded	Early gastrula	not recorded	ERP110164	281.26
ERR2816233	Planula 24hpf	not recorded	Planula 24hpf	not recorded	ERP110164	215.87
ERR2816232	Planula 24hpf	not recorded	Planula 24hpf	not recorded	ERP110164	207.46
ERR2816235	Planula 48hpf	not recorded	Planula 48hpf	not recorded	ERP110164	133.25
ERR2816234	Planula 48hpf	not recorded	Planula 48hpf	not recorded	ERP110164	109.43
ERR2816236	Planula 72hpf	not recorded	Planula 72hpf	not recorded	ERP110164	111.93
ERR2816237	Planula 72hpf	not recorded	Planula 72hpf	not recorded	ERP110164	84.67
ERR2816238	Primary polyp	not recorded	Primary polyp	not recorded	ERP110164	70.60
ERR2816239	Primary polyp	not recorded	Primary polyp	not recorded	ERP110164	63.64
ERR2816241	Gastrozooid	not recorded	Gastrozooid	not recorded	ERP110164	70.24
ERR2816240	Gastrozooid	not recorded	Gastrozooid	not recorded	ERP110164	55.65
ERR2816242	Gonozooid	not recorded	Gonozooid	not recorded	ERP110164	101.68
ERR2816243	Gonozooid	not recorded	Gonozooid	not recorded	ERP110164	93.94
ERR2816245	Stolon	not recorded	Stolon	not recorded	ERP110164	88.96
ERR2816244	Stolon	not recorded	Stolon	not recorded	ERP110164	71.93
ERR2816247	Baby medusa	not recorded	Baby medusa	not recorded	ERP110164	77.09
ERR2816246	Baby medusa	not recorded	Baby medusa	not recorded	ERP110164	72.90
ERR3299472	medusa · Experiment Condition B1	not recorded	medusa	Experiment Condition B1	ERP115020	54.44
ERR3299471	medusa · Experiment Condition B1	not recorded	medusa	Experiment Condition B1	ERP115020	45.88
ERR3299473	medusa · Experiment Condition B2	not recorded	medusa	Experiment Condition B2	ERP115020	53.31
ERR3299474	medusa · Experiment Condition B2	not recorded	medusa	Experiment Condition B2	ERP115020	50.42
ERR2862244	Mixed	not recorded	Mixed	not recorded	ERP110164	72.22

Source: CnidoSite RNA-seq expression matrices (CHEMI_TPM, StringTie quantification over 40 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.