Gene detail

Detailed information of XP_066936893.1 in Clytia hemisphaerica

Genomic Location: NW_027103388.1:144943...170857
NR annotation: AAG25993.1, integrin alpha chain [Podocoryna carnea]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066936893.1

ATGGCGGACGAAGACAGGAGGAGGACGATGAAGTTACCACTGTTTACACTAGTTTTTCTTGCCCTACTGGGTAATTTATCTGTCGTTACATGTTTTAACATTGATTTGAATAATAGTTTTATTTATTCTGGCAAACAACCTGGATCATTCTTCGGATATTCACTGGCAATCAGCAAGGAGCTAAATGCAATTATTGTTGGAGCCCCTAAAGGCAATGAATACAAGAAAAGTGAAGTTGTCACCCAAAATGATAATTGGGGGTCTGTCTATAGTTGTGTAGTGACACCAGGCTCGACAGATTGTGAACTACTCAATAAAGTTGATGACATAACAAAAGTACAAAATAATCCTGGAAAGAAAGATCAATGGATGGGTGCTACTGTTTATTCAGATCACAAAAATGTTCTGAGTTGTGCACCGAGGTTCAATATTCCTAACACAATAAACAATGAAATTTACTACACGGGGAAATGTGATTTCTTCAATGCCATCTCAAAATCAAATTTCAAAGATTATGAATTCAAGCCCTGTGAACAAGTGGCAAGAAGTGGCGAAAATGGTGCAAAATCACATGGAATGTGTGAAGCAGGGTTTTCTGCAAACATTATCCCTGTTGGAAACGACATGAATGTTGGTACAGGCTTGTTCACCACCCACAACGATAAGGGTGAAATCTTTGAAAAAGTTGCTATGTCAGATGACGACGGGAAAAAGAAAAAAATTGCTCCAACTACGGATCTTGGGTTCTTTGATTATATGGGTTACGCTATTACAACTGGAAAATTCAAAAAAGATAAAGGCATTTTCATTGTTGGTGGAGCACCTAGAGGAAACCAACTCAAAGGAAAAGTTATAATGTATGACTCTGCTAATCCAAACCTGATCAAATTCTCATCGCAAATCCTCAGCCCTTCTGAACAGGTTGGATCATATTTTGGTGCTTCTCTAGGAGCTGCAGATATTAATGGAGATGGGTTTTCAGACTTGGTAGTTGGTGCTCCACACTATGCAAACACGAGACCTAACCAAGGAGCTATCTTTGTTTACCTGAACGATCAAAACGATGGATTGAAATTCACTGATCAACAATTCTATGGGACTTATGAGGACGGCTTCTTTGGTTACTCCATTGGATCTGTCGGTGATTTGAATAAAGATGGCAAAGATGACATAGCAGTAGGTGCACCATGGGCTGGTGATAACAACGAAGGAGTCGTCTACCTTTATTACGGTACTGGAAAGGATGGCCAACCACTTGCACAAAAACAGATCATCATGCCAAAAGATATCAAAGGTGGTGCTTCGTTCCTTGGCTTCGGTTTTTCATTCGCCGATTTTTATCAGTATTCCACTGATCCTGGTCATCACAACGACCTTGATGAAAATAAATACAATGATCTTGCTATTGGTGCTTTCAAATCAGGTCACGTTGCTTTATTAAGAGCTCGACCAGTGGTTACCATCAAGGGGGAGTTGAAAACGGATGGAAAGCCAAAAATCGACCTCTCCAGTAAAGATCCAAATACCATTTGTAAATTCAAGGGTACGGATTTCAAGTGCATTAAAGGAGCAAAAGTATGCTTCCAAGTTGAACAACAGGAGGATGATCCACAAAACGTCAAATACTCCATCGAGGTCGACGCCCAAACAGATGTCAAACGTGAAAAGCGTGGATTTTTGGCAGATAAAAATGGTGATCAGGTCTATCAAATCGACGAAATAGTTTCTGCTGTTGGAAAAGCTGAAAAGTGCACATCTCCATTCGATATTTTCATTAAGAATAACACCAAAAACGTTCTGAACGCATTCCGTGTGACCTTGAAATGGGAATATGAAGCCGCCTGTAAAGATAACGACATTTGTCCTGTTTCTAACAAAATGGAGGTCCTCACAATCCCCTATGATTTCCCCTACTTGAAAGGGTGTAGCGATGATGGTAATGAAGAATGTAATGTTGATCTTCAGCTCACCATGGAAGGTGTTGTCTCATCTGGTGGCAAGAACATTTTATTGGGTGTTACAAAAACCGTCACTCTTGTCGTGGACGTGAAGAATGTCGGTGAAAATTCCTTCCTGAACACTCTCAAAGTTACCTACCCTAAGAAACAAGTCAGTCCCAACAAAGTGACCATCGCTAGCTATGTTGGTCTCGTCGAATGGTTGCCAGGGGATACTGAAGATTCGGACATCAAAAGTGTTATTGTGACACTCTCATCACCCATCAAACAAAATGGCATCGACAAAGTGTCTATCGTATTCAGTGTTCTTAACGTGGGTAGAGGAAAAGATGTCGTTTTCAACGCTAACGTAACTACTCAAAGTACAGAGATGAAGCCTGCAGACAATGTGGCGCGTGTTGATCTGCCAGTTACTTTGAATGCAAACCTCACAGTTTCAGGGTCGGTGAAGCCAGAGAATGTGAAATGGGAAAAAGGCGTGGCCAGCTTGAATAAAGTTGGACCTACCGTTACTCACACCTTTTACTTCCAAAACATGGGACCATCAGCTGCTGAAGAATCTGATGTTTTGATCAAGATCCCTGAAAAGATGGGCGGAAATTACATTTTGAATATTGTCAAAGTTACCCTTATACCAGGTATTGGTTACAAAGATGACATTGGCAAATGTGAGCAAGGAACCTTGAACCCTTTGAATTTGGATTTATCGCAAATGAACAATACGCGACGGAGAAGAAGGCGTGAAGTGAGCGCTCCAGTCATTGTTGATTGTGGAAGTAATACGGGATGCATGATCATTAATTGTAAATTAAATCGACTTGGAAAATCACAAAATGCTCAAGTTACCGTCACATCGACTCTCGTTGAAGCTACCTTCGACAAATTGAAGGAAAGCCGACAAGTTGTAGCTTTTGCGAAATTTTCGTCAGAATTTGTCAAACGAGCACGCGGAGCTGAACCTGACGAAGTGAACGTGCCTTTGAATGTTAACACGCCGTATTTGAAAGTAGAAAAACAAGGAGAACCAATCGCATGGTGGATTATTTTGTTATGTATTTTGGGAGCTGTTCTCATTATTGGTCTTATCGTATTCATCTTATATAAGAAAGGATTTTTCAAGCGAAAGAAGCACGGAGAAGAGGAAGAAGAAGGATTACGTAAGGGAGATCCAGACGATGATTATTAG

Transcript

Protein

Uniprot

Uniprot term	Description
A8X3A7	Integrin alpha pat-2 OS=Caenorhabditis briggsae OX=6238 GN=pat-2 PE=3 SV=2
P34446	Integrin alpha pat-2 OS=Caenorhabditis elegans OX=6239 GN=pat-2 PE=1 SV=1
P26009	Integrin alpha-8 OS=Gallus gallus OX=9031 GN=ITGA8 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20806	Integrin_A_Ig_3	Integrin alpha Ig-like domain 3	Domain	Interproscan
PF01839	FG-GAP	FG-GAP repeat	Repeat	Interproscan
PF20805	Integrin_A_Ig_2	Integrin alpha Ig-like domain 2	Domain	Interproscan
PF08441	Integrin_A_Ig_1	Integrin alpha Ig-like domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013519	Repeat	Integrin alpha beta-propellor	Interproscan
IPR048286	Domain	Integrin alpha, third immunoglobulin-like domain	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR000413	Family	Integrin alpha chain	Interproscan
IPR018184	Conserved_site	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Interproscan
IPR032695	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR048285	Domain	Integrin alpha, second immunoglobulin-like domain	Interproscan
IPR013649	Domain	Integrin alpha, first immunoglubulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23220	INTEGRIN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005178	Molecular Function	integrin binding	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305	Cellular Component	integrin complex	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0033627	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06485	ITGA6, CD49f; integrin alpha 6	-	CD molecules	ko04090	deepkoala