Gene detail

Detailed information of XP_068672829.1 in Montipora foliosa

Genomic Location: chr9:16907082...16916734
NR annotation: XP_029193153.1, 40S ribosomal protein SA-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RKS5	Small ribosomal subunit protein uS2 OS=Nematostella vectensis OX=45351 GN=v1g198553 PE=3 SV=1
Q6P8D1	Small ribosomal subunit protein uS2 OS=Xenopus tropicalis OX=8364 GN=rpsa PE=2 SV=1
P38983	Small ribosomal subunit protein uS2 OS=Rattus norvegicus OX=10116 GN=Rpsa PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007673 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16122 all species →	40S_SA_C	40S ribosomal protein SA C-terminus	Family	Interproscan
PF00318 all species →	Ribosomal_S2	Ribosomal protein S2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032281 all species →	Domain	Small ribosomal subunit protein uS2, C-terminal domain	Interproscan
IPR027498 all species →	Family	Small ribosomal subunit protein uS2, eukaryotic	Interproscan
IPR005707 all species →	Family	Small ribosomal subunit protein uS2, eukaryotic/archaeal	Interproscan
IPR001865 all species →	Family	Small ribosomal subunit protein uS2	Interproscan
IPR023591 all species →	Homologous_superfamily	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Interproscan
IPR018130 all species →	Conserved_site	Small ribosomal subunit protein uS2, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11489 all species →	40S RIBOSOMAL PROTEIN SA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02998	RP-SAe, RPSA; small subunit ribosomal protein SAe	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068672829.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

3,122.0Max TPM

1,839.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	1,839.15	3,122.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	3,122.04
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	3,078.65
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	3,013.05
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	2,610.91
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	2,609.54
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	2,605.13
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	2,579.05
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	2,562.06
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	2,524.13
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	2,496.98
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	2,495.87
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	2,491.04
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	2,450.00
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	2,438.57
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	2,436.19
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	2,434.42
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	2,230.82
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	2,229.15
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	2,030.93
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	2,002.61
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	1,957.08
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	1,945.31
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	1,937.58
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	1,765.43
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	1,726.97
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	1,659.01
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	1,588.99
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	1,118.49
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	1,085.18
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	984.15
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.