Gene detail

Detailed information of XP_068673003.1 in Montipora foliosa

Genomic Location: chr9:4636299...4644228
NR annotation: XP_029199901.1, PRKCA-binding protein-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068816902.1

ACTGATTATCCACTGGTTGACTTGAGGGCTCAAGAAAATCAAAGTTTgctgaaaatcaaagatttttaagaacgttttttacatgtatgtaaggGTTTTTTGGACACGATGATGGAATATGAGTATGAAATAGACCCTAGGGGTCTTCAAGGTAAACCGGGATCAGTTGTGTTGAAAAAGGATAAACAAAATCTTATTGGTATCAGCATCGGAGGGGGAGCTCCTCTATGCCCTTGCCTTTATGTGGTTCAAGTATTTGACAATACGCCAGCTTCAAGAGAAGGAGTTCTTCAAGCTGGGGATGAAATCGTTGGCGTCAATGGCAAATCTCTGAGGGGAAAGACCAAAGTAGACGTGGCACGAGCCATTCAAGCAGTGAAAGACGAGGTGACCATTAATTACGTAAAGCTGCATGCTGAACCAACGGAAGGAAAAACCTTGGACATAATCTTGAAGAAAATGAAGCACCGCATTGTGGAACACATGAGTTCATCCACTGCAGATGCCTTGGGCCTCAGCAGAGCAATTTTATGTAATGATGGCTTGGTAAAGAAGCTTGAAGAACTGGAGCAAAATGCTAACATTTACAAGGGCCTCCTTGATCATGCACGGCAGTTTCTTCAAAGTTTCTATAACTTAGCACAAACACACAAAGAGCTGGGAGATATCTTTGCCTCCATAGGTGTACGAGAATTGCAACCAAATGCAAGTGAAGCATTTGCTATTTTCAGTGAGGCTCACAGGAACTTTGAAAGACTTGGAATGGATTACTTAAAGAAAGTAAAACCAATGTTAAGTGATTTAAGCACTTATCTTGCCAAGGCAATCCCAGACACCAAACTGACAATCAAGAAATATGCTGATGCCAAATTTGAGTACTTGtccTACTGCCTGAAGGTCAAGGAAATGGATGATGAAGAGTATGCTTATGCTGCATTACATGAATCACTTTACAGAGTAGAAACAGGAAACTATGATTACAGGGTAGTGTTGCGTTGTCGTCAGTTGGCAAGAGAGAGATTTGCAAAACTACGATCTGATGTGCTTGTCAAACTTGAGCTTCTTGATCAGAAACATGTGCAAGACATTGTGTTCCAGCTACAGCGGTTTGTTGCAGCTGTCACAGAGTATCATGAGAATTCCTTTGCAGTTCTTAAGGAGGCAAATGTCTTTCCTATAGAAGTTGATCTTACACGAGGAGCACTGGGAAATaccttgaaataatttttaagtCCATGTAAACGAGACAAAAAGAAACTTGTACAGAATatggaatttatttattcagTTGAGACAGTAGCATTGAAATCGTTAAAAGGGAGCAGCATTCAAATTGTGTGGGTAATGTTTTTCAAATTACTGTGTTGTGTAGTTTTCAAGAATCTCTAGAAAACAACAGAATACTGAACCCATGTGATGCCAATGCAATGAATCAACGTAAATCTCAGCTGATTACATGCAAGCATTCTATGCCAACACAGCTAcccatagaccctatgcaaaaatggctgcctttaaattattcttttgttcatattcaaaatagcccaactaacctcgttcgggataacaaattctttagaatttttgtctcaaaaacgaggttagttgggctattttgaatatgaacaaaagaataattatttaaaggcagccatttttccatAGGGTCTATGAAAGCATCATAACAGTTGCTtattttgttttagtgtaaCATTGTCATAACACTAGcactattttaaaaaaatgcagagagttTGACAATACAGTGATTATCATGTTATTGACAAGTGTTTTTCCATACTCTCCTGCCAGCCAAAGCTCTGTTACCAGGACAGGTCTTTATGAAACCATACAATGTAATTTTCCATCCTTAGTGCATTCAACTCCATCTCCAGATCTTGATTGTTTTGTCAAGTGATCCTGACACAATAATCTGTTGCGATGGATGAGCATCACAGGTCAACACGGGTCCTGTGTGCCCAACAAGCTTCTCAACCACTTCACCAGTGTTCAGGTCCCAGATAAAGATATGACCATCTTCTGATCCAGAAATAACCCACTTTCTATTTACAGTACTAAAACAGCCCATCACACAGTAATCCTTGTTTATATGACCTGCAGGAAGAAAGAACGCAATGttacaaagacaaacaaaactgAGATCTACCTGTCTCTTTACTGGAGTATTAGTTGTTGTTGCTCAAGCAAATGagataaataattaattattcaaaCTTTACCAATTGTAAACATTCCCTGAATAAATGATATAATTAGTGATAATCAATGTTTAAGTGGTGTTTCCTTGGACACttgcaaataaaatattaacaaaagca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EP80	PRKCA-binding protein OS=Rattus norvegicus OX=10116 GN=Pick1 PE=1 SV=1
Q9NRD5	PRKCA-binding protein OS=Homo sapiens OX=9606 GN=PICK1 PE=1 SV=2
Q5REH1	PRKCA-binding protein OS=Pongo abelii OX=9601 GN=PICK1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06456 all species →	Arfaptin	Arfaptin-like domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010504 all species →	Domain	Arfaptin homology (AH) domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR030798 all species →	Family	Arfaptin family	Interproscan
IPR037959 all species →	Domain	PICK1, BAR domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12141 all species →	ARFAPTIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019904 all species →	Molecular Function	protein domain specific binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002092 all species →	Biological Process	positive regulation of receptor internalization	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24062	PICK1; PRKCA-binding protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068673003.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

91.8Max TPM

49.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	49.88	91.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	91.83
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	77.51
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	77.24
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	75.11
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	75.06
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	72.67
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	72.65
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	69.44
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	68.70
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	68.13
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	66.62
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	65.36
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	65.23
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	63.14
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	62.79
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	62.53
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	62.27
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	61.86
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	61.52
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	59.28
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	59.23
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	57.73
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	56.54
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	52.80
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	51.48
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	35.43
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	31.45
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	28.30
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	27.05
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	16.62
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.