Gene detail

Detailed information of XP_068674002.1 in Montipora foliosa

Genomic Location: chr9:40758966...40787447
NR annotation: XP_020620402.1, TNF receptor-associated factor 6-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068817901.1

AGGAACATTTGAAGTGAGTGTGAATTGTGCAATGTGGACTGTCCCAAGAACCTGCGgttaagaaattttaaaaacgaaAGATCAAAAGAAGCATTTTTGAAGAATGATGTTGTCAGGAACGCGGATCAAAATATCCTTTGCAACTACTGTACTGAAGAAGTGCTGTGGCCCATGGAATGGAGATTCATGATCAAAATTGCCCTCAGTACCCTTTGTTGTGCAAGAACTgtggaaaagaaaagatttcAAGAAACAAGATGCAAGAACACAAAGAGAAAGACTGTCTACAAGCAGAAATAAAATGCCCTTTCAGGACTGTGGGGTGTTTGTTTGAGGGCTCACCCTCAGCAGTGAGTGCACATGTTACTGAGCAGCTAAGCAGCCATTTGAGTGACATGAAAGGATCATTTGCATCATCAAAGGTTGATCAGTCCATGACTAGTCTGCGGAATGAGACACGGCACACCAAGTGGGGCCTGGAGGCATGTTCACAAGTGCAGGCCAGCCACAATATGGTTTTGAATGATTTAGCACAGGGTCAGCAGGTGCATACAGAAACAGCTGAACTGAGATGCGGTAATACTGCATTAACCAGCAGGTTTCAGCAATTGGAATGCCTCCTTAAAGACATTTCTATGAGGATAGAAAGGCTATCACAAGAACTTACTGAAAGGTTGGGCCTGGAGGCATGTCCACAAGTGCAGGCCACCCATGACATGGTTTTGAATGACTTTGCATTGGGTCAGAAGGACCAACCCTCAGCAGTGTGTGCACATGTTATTGAGCAGCTAAGCAGCCATTTGAGTGACACAAAAGGATCATTTGCGTCATCAAAGGCTGATCAGTCCATGACCAGTCTGTGGAATCACTCACAGCGCACCAGGTTGGGCCTGGAAGCATGTCCGCAAGTGCAGGCCAGCCACGACATGGCTTTGGATGACTTTGCACTGGGTCAGCAGGTGCGTACAGAAATAGCTGAACTGAGATGCGGTAATACTGCGTTAACCAGCAGGATTCAGCAAGTGGAACGCCTCCTTAAAGACGTATCTATGAGGGTAGAAAGGTTGGGCCTGGAGGCACGTCCACAAGTGCAGGCCGCCCATGACATGGTTTTGAATGACTCTGCACTGGGTCAGAAGGACCCACCCTCAGCAGTGAGTGCACGTGTTATTGAACAACTAAGCAGCCATTTGAGTGACACGAAAGGATCATTTGCGTCATCAAAGGCTGATCAGTCCATGACCAGTCTGTGGAATCACTCACAGCGCACCAGGTTGGGCCTGGAAGCACGTCCGCAAGTGCAGGCCAGCCACGACATGGCTTTGAATGAGTTTGCACCGGGTCAGCAGGTGCGTACAGAAATAGCTGAACTGAGATGCGCTAATACTGCATTAACCAGCAGAATTCAGCAAGTGGAACGCCTCCTCAAAGACCGATGTGTGAGAGTAGAAGGGCCATCACAAGAGCTTACTGAAAGGCTTGAACACCCAGAGGCGAGAGTGATGGAATATGAAGGCCGTGTATGCAATGGTACCTACATTTGGAGGATAGAGAATTACCGCCAGTGTCGCCAAGATGCTATGAACGGAGTTATAACGGCCATATACAGCCCAGCCATCCATACCAGCCTGTACGGGTACAAACTCTGCATGCGGATCAACTTAAATGGTGTGGACAGTGGAGTCGGAAGGTTCGTTGCTCTGTCCGTTCACATGATGCAAGGGGATTATGATAACATCCTAGAATGGCCGTTCACTGGAAGAATCGCTCTTTCCATCTTGGATCAGAGAGATGGCGTGGAATTTCGTCAGCATATCAGCGAGACCCTGGTCGCCAAGCCAAATCTGTTGGCCTTTCAGAGACCAACAGCTCCGTGCAATTACAACGGCTACGGCTATGTGGAGTTTGCTCCAATTGAGCAGATCCGTGAGTCACAATACGTGAAGAACAATACCATGTTAGTACGCATTCAGGTTTCCCGCTAACTTGACTTAAGTGTCATTATATTTAGCTTGAGTATAAGCTaatgggaaattatttgattttggacaaaacgcgcgtgaaattattccctaatttcactcgtcaccatttgattacccatactaatttACAGTTCAGCTTTAACCCGGTACATGGTTCCAGGAATCTGATAGAATGTTTCCCATATTTTATAGTATTATATCTTGGAATGTCGAACTCTCAGCTTTTTAGATTATAACGAGAGTGCTTGACTTGAAACAATCAGGTACACCAACAGATACAAGGTTGTTTCTTACTTTAAACATTAGTATAGCAATGTCTTGCAAACGCCTATTTTCTAATGTTGGCAAATTGGCGCGTTTCAGTAACTGCTCTTAAGTTAGCGAAGATCTGAACACTGCCCATAACGCGCGCTCTTTAATGCGCTCTAACGTTCTACTGTCTTTTTTAGCGGAATCGTcagatttctttttctttttttttttttaattttttttaaatattttttttcaaaatagatACTATTCTACGAACACTACACTGCACTATATACAAGACACTACTTACAAAACTTTACTTGCAATGTACTTCATTAGCTGCTAACAACACGACTTCGTGTCACAAGCTACTTACGAAATCATCTTACTTAGCTTAACGTAacacattaattattatttatttacggCTGCATTACGCTATAGGTTCTGTTGAATAAAAGATACACTTAATgagatttttaaaaataataataataataattgaataaaTAAGTAGTATAAGTTTTAGAAATGATAATAGTAGAAATAAGAGGAAGGGTGATGGAAGTGCAACCGAGTGTGAGAAATGAAATTGCTTGAAATAAAAGTTTGTCATTTTTTGTTAAAGTCAGTGGTGTTATTTTTGGAGGCTATCAATTGTTCCGTGAGGGCTTTTTCACGCAGTAGTAATTTATAAAACTCGAAATCTAACGATTCCTCATTTAAGAAGCACCTATAGATGAAGTATTTTGCCACGAGGAGGGCGAGATTTGTTATAGTTTTGAACTTGCAaggatgaaaataaacagaGAGAATTGACACC

Protein

Uniprot

Uniprot term	Description
P70196	TNF receptor-associated factor 6 OS=Mus musculus OX=10090 GN=Traf6 PE=1 SV=2
B5DF45	TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1
A7XUJ6	TNF receptor-associated factor 6 OS=Sus scrofa OX=9823 GN=TRAF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031663	Biological Process	lipopolysaccharide-mediated signaling pathway	Interproscan
GO:0032813	Molecular Function	tumor necrosis factor receptor superfamily binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03174	TRAF3; TNF receptor-associated factor 3	-	Alcoholic liver disease	ko04936	deepkoala