Gene detail

Detailed information of XP_068674094.1 in Montipora foliosa

Genomic Location: chr9:14578200...14596041
NR annotation: XP_020627886.1, probable ATP-dependent RNA helicase DDX47 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068817993.1

AAGCTATTCGACATGGCGGAGGTAGACGAAGAAATTCTGAAAGAAGAAGTTTCTTTTAAATCCCTCGGTGTTGTCGATGTTCTTTGTGAAGCATGTCGGCAATTGGAATGGAAATCACCAACCAAAATTCAGAGAGAAGCTATTCCTGTTGCTTTACAAGGAAAAGACATCATCGGTTTGGCAGAAACAGGTTCTGGGAAGACAGGAGCATTTGCTTTACCAGTTCTTCAGTCATTATTGGAAAATCCCCAGAGATTGTATGCACTGGTCCTTACCCCAACAAGGGAACTGGcttttcaaatttctgaacagTTTGAAGCACTTGGTTCAAGTATTGGAGTCAAATGCGCTGTGATTGTGGGTGGAATGGACATGATGTCTCAAGCCCTGATGCTGGCAAAGAAACCGCACATTATAATAGCATCTCCAGGAAGACTGATTGATCACTTAGAAAACACAAAGGGATTTAGTTTAAGAACATTAAAGTATTTGATTATGGATGAAGCTGATAGAATATTGAatcttgattttgaaaaagagGTTGACAAGCTTTTGAAAGTCATACCCAGAGAAAGAAGAACATACTTATATTCTGCAACAATGACCAAGAAGGTTCAAAAACTTCAAAGAGCATCCTTGCAAAATCCAGTGAAAGTTGAGGTTTCAACAAAATACACGACAGTTGAAAAGTTACAACAAAGTTATTTATTCATTCCAAATAAATATAAGGACTGCTATCTGGTTTTCATCCTCAATGACTTGGCTGGAAATAGTTTCATGGTGTTTTGTGGAACGTGTAACAATGTGCAAAGAGTGGCATTAATGTTAAGAAATCTTGGCCTTCAAGCTGTTCCTCTTCATGGGCAAATGGGTCAGTCCAAGCGACTCGGTGCTTTGAACAAGTTCAAGTCCAAGGACCGTTCAATTCTGATAGCTACAGATGTGGCCAGCAGGGGATTGGATATACCTCATGTGGATGTTGTGATCAATTTTGACATCCCAACACATTCAAAGGATTACATTCATCGAGTTGGGCGAACAGCCAGAGCAGGTCGAGCGGGCCGCGCGATTACCTTTGTTACACAGTACGATGTTGAACTGTATCAGCGCATTGAGCAACTTATTGAAAAGAAACTTCCATTGTACCCAACAGTGGAAGATGAAGTACTGTTACTGATGGAGCGTGTATCGGAAGCTCAAAGATATGCAAAAATGGAACAGAGGGAGATGCAggagaacaagaaaaaaaagagaccGGTGGAGGAGGACAGTTTGAACCAGGAGATAACATTGCCGAGCAAGAAAAAGAAGTTTGGAGGAAAAGGCAAGAAACATAAAGGAAAGAAAGGGAAATGAAAGATATGCCTTCGGGATTCTACAAACGGTACAATTGAAGCTCAATCGGTGACCTTACTTGGTGCTGAATACGGCTCGTTCTTCATTTGGCTTCCAAGAGTTTGAGCAGCCGTGCGTTCGCTACTTCCGTTTTGagtgaaaggaaaagaaactgcATGAGATTTGCAAAAATACAGTTGAACTTCGGTTCAACAAGTGGCAGGGCGCTGGAAAAGTTAATTCATTTTATCGGTGTTTCGTTGTGTCAACGTTCCTTTTCAAACATTTAACTGTAAGTGCATGGGCTTAAGAATTTCGTTCTTTGTGTCGAGAACATAGTGATACTGAGGTTCGTTCAAACGAGTTTTCACTCAAAGAGGTAGATTAGGTTTCCCGATCCTCGCCCTCTTCCTTGTATCACATTCGATGAACAAAGAAAGGGGCCATGCTCGCAGTGCATACTGAGCTTTCCTCAATGCTTACTTCAAATAGAGATATCGGTAAGCAGATACGGACATCGTTGACTGAATGTTTCATGTATTTATTCGGGATAGACTTGCTATTTACCTCTTTGGCTTGTTTCACGTCTCAGTATTTGTTATTTCAGGCCAGGAAGTTAAAACCTCGAGTGTCAGTATTTCCAACCCAGAGAATAAGCCGGTTTTTCCCCGGACTCCCGGACAAGTCCTGAAGTTCCTTCTCAGTCTAAGTTTTCCGACACCGAGTGTAATTCGTATGTAGGTACAAGATTACAAGTCCGATCAAACATGCAACGCTTGAAGGAACTCAGTGCTAGTAAGCCTGGGAAATCTTAATGAGgccgctttccatttgacaaagaactgaccggccagacctggcatttggaaggactatcTCTACGGCGTCtgcaaattaacacacttcgaggataaTATATTTGctcttgtcacacggcggccatattgtcccaggagaccaaaaatgctttgttttaccacgccaagcctcacccccatggtttccactgcgaggcttggcgtggtaaaacaaagctcttctggtctcccgggacaatatggccgccgtgtggcAAGGGCGAAttctcctccagaagaatgcgagggattatcttgcaagttttccttcaaattgttgtattttctttgcaCACTGACAGGTCTGGTCGGCCAGTTCTGAAAAAAGGAAGCAAAGTGCACTTAGTTGTTAGAGGGAGTTTGCATCGCGTTTACGTTAAACGGAAAACTTGGAAGCGAGAGCGTTCTGCTTGTCATAATAGAATGAGAATTTTCTTATAGTAACTTGCCTCTCTCTTCTGAGAAGTTGCGTAATATCTCAAGATGACAGGCAAGAAATGAGCAATAATCAAACAAGGTTCTTGGATTTGGCACCATGCAAATTTCAGCTTGGCGTTTTGCCGTTAACCGTAAACGCGTTTCAAAATCTcaccattagggagctttagcaactcctacgaaaaaaaaaaacacgttacAATAAACAATTGTTCAAGTCATAACtattttgcctttattccaTCCTGTTTGCGTTTTACTATGTTGGTAAAGTAATCAATAACTTGATCAGTAGAAACGCTGCTGAAGGAAAGTTGCCGTTTTGTATCGGCTCATGTTGTCTGACTTCAAAGGTTGAAAGTGGAGAAAGGGAATAAAAGGTGGTAAAACGAATTGCCGCACGTGTAGCACgtttttttcatttataaaaCCCACGTTTTGTTTGCGTTGCCGTCGCTTAATTTCTATTGAACATGAAGACGTGCTTATGAAAAACGCAGTTCCTTTGACACCTGCGGATCGCGAGTCCATCCATCATGTTGGCATGTAGGCTGAAAAATTTGTGCAGCGAAATAAGCCCTTAAGGACAAAGCGATTATTTGACAAGAGGGTGTTTCATTTTCAGATTCCTACTGAAGATGTTATCTCTTATCACCATGCAAAATGTTTCACTAGTCCTTTCTGTGTTGTGCTGTAACTG

Protein

Uniprot

Uniprot term	Description
Q29S22	Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Q9H0S4	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Q9CWX9	Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR044765	Domain	DDX47/Rrp3, DEAD-box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14777	DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala