Gene detail

Detailed information of XP_068674978.1 in Montipora foliosa

Genomic Location: chr9:48702535...48720551
NR annotation: XP_015752267.1, PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068818877.1

CTAGTAGATGTAGACAGCTCCGGATGGTCTAGAGGTCTTTTAttggcagcgtttacacgaacgcggttttatttgtaaccgcatcgttttcgatgcggttacaccttctgtttacacgacaccgttAGAGACTGTTGctgaaaccgtgtcgatttgaaacccctgccaaaagtggagcgttttcaaaacgatgcggtttcaccTGTCGTGTCGTGTAAActgcgaaaccgcatcgatttgaatacggtttaCTATTtcggcgcgaaatttgcattgttcaattcaaaatagtgaatatagcacgtagtgcagcgctcgcttataccatcgCAACTTGAATTTTCGGGCGAAAACGGTTCGGTGTAAACACtaccaaaccgcatcgattttgacgcggtttcgaagtcatgaaaccgtgtcgatgtgaaaccgcgttcgtgtaaacgctgtcATAGTCACAGTTCCAGCTGAGGCAGGGGTCGCGGTATCGTTTTCTTTTTACGTAATCAAATTATGATGGCTTCGACCTTATTTTCGTAAGAACAGGACCTCTAACTTTGTTTTGGATGACCAGTCAGGTATGACATCGAGGAGAagcctttatttaaaaaacgaGCCACCCCTGGGGAAGATGTCACTGTGCTCTCTGGTGGGGAGATAACGTGCCCTTTTGGTGGAGAAAACTGGCGGGAGATTTACTTGAGAGATTTACACGGTTTGCAACGCGATAATAGACCGGAAAACTTTGCGAAATAAGCCAACATTTCTTCCGGTCATTGACTTTTTACGACATTGGATAATGAACAGGCTGGACTTTTATGCAGATGCTGTGAGTTGGCTTGAGGAAGCTGTTTCTGAGGGCAAGAAAACAGACAATGTTGATATAAATGTGATAATTGCAAACTGTAAAAACACTGTCTACTGTGTCCAGACCCTTCTCCTTATAGAAAAAGACTCACTCAAGTTGaaaGCCCTTAATGAATTATCTACTTCTCTGGAAAGCTATCTTGAGGCTTTTTATAACAAGAAAAGGCAGCTTGATGGAATAAAGGCAATTGTACATGGAATTGATTCAGTTGTTAGTGGCAACGAAGAAAATCAGTCCAAGAGACGAAAGATTGCGATTGAGGATACGATTGTAGAAAAAGGAagtgtaaaattttgcaatgttgTGGGTCTCATAAATGCAAAGCAGGCATTGAAAGAAGCAATTATTATGCCTTTGCAATATCCACATTTGTTCACAGGAAGTCGGCAACCTTGGCGCAGGATACTCTTGTATGGACCACCAGGCACAGGGAAGACAAGACTTGCACAAGCAGTGGCATCAGAAATTGACTCAATCTTTTACAGTGTATCCAGTTCTGATCTAGTCTCCAGCTGGGTGGGAGAAAGTGAAAAGCTTATCAAGGAGCTTTTCCAGAATGCAAGGAAGCAAAAAGGCCAGTCGGTAATATTTATTGATGAGATTGACAGTATCTGCAGAAGAAGGAGCATACAGGAGGAAGAGTATACAAGAAGAATCAAAACGGAGTTGCTTAAACAGaTGGAAGGAGCTGATCACAATTCATCGTATCAACATTTTATTCTTTTATGTGCAACCAATTGCCCCTGGGAACTAGACACAGCTTTTCTGAGAAGGTTTCAAAAACGAATTTACGTTCCTCTTCCTGAAGAAGAAGCAAGAATAAAACTGATTGAGATGCACCTAGCTGGCACACCATCATCACTGTCAACTGAAGACTGGTGTTTACtgggtcaaaaaacaaagggaTTGTCTGGTAGTGATTTGTCGAACTGTACATCTGATGCTATGTTTGAACCAATGCGTGAATTGGAGGCCAACACCTACTGGAAAGTCAACCTGGAATTATTCTATTGTCCTTGTTCAGAAACTGAGAGGGATTGTATACATTCATCTTTGAGTGACCTTCCATCAGAAAAGATTCAACCCCGCCCTGTGACTGTAAAAGATTTCCTTAACATTTTGTCACGCAACACACGCACAGTAACAGAGAAAGATGTTGAAAGATTTGAACAGTTTACAATGAACCTGGGATACAAAGGATAACCAACAGTTGGATCGGAATCTCTTATCCTAAATGGTTAACAGAGTCTTAAGGAAAATGAACTACcagtattttaaattaaaaccGGAGAAAATCTTCAACATACTCAAACAAATAAAGGCAGCCAGGAAAAgtcacataacataacattGAATACAACTAGTCATTTTTCACTTTGTAATTTGTGAACATGTACTGTCTGATTAGCTCCTAGTCAACTGTCAGTTTTCTGTTTTCATCAGAGGGCAGGTTTATAGCACACTCACTCAGATCAGATCTCCACTTACATGCTTTTCCATGATGCATTGTTGTTTGTATTGTAGTTGTTTACTTCATTACTTCTTTTGGtagcagggatggcacagtggtgagaacactcgcctcccaccaatctgacccaggtttgattcccatTCCCagcgtcgtatgtgggttgagtttgttgttggttctcaacCAACAATGCCAAATTTCAGTTCAATCCGGAATGCATGCACACATGTTGAGTGAGCTCCCGAGCGTTCTGAAGTTAcgtgggtaaacaaattacACTTAACAAAATCATTGTCAGACAAAAGACATAATGTAATAAAAGCAAGCAGTTAACTGAAGATAAACATCTTGTGTCACTTAATTTTCAATATTGTGTTTAAGCTTACTTTAGAAAACAATCAAGTGATGcaccttttaaaataaaataaaaaaaaagtctccgctta

Protein

Uniprot

Uniprot term	Description
Q9ZNT0	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1
D0FH76	Vacuolar protein sorting-associated protein 4 OS=Bombyx mori OX=7091 GN=VPS4 PE=1 SV=1
O75351	Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12196	VPS4; vacuolar protein-sorting-associated protein 4	-	DNA repair and recombination proteins	ko03400	deepkoala