Gene detail

Detailed information of XP_068675167.1 in Montipora foliosa

Genomic Location: chr1:8718204...8746416
NR annotation: XP_029200533.2, calretinin-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08331	Calretinin OS=Mus musculus OX=10090 GN=Calb2 PE=1 SV=3
P47728	Calretinin OS=Rattus norvegicus OX=10116 GN=Calb2 PE=1 SV=1
P07090	Calretinin OS=Gallus gallus OX=9031 GN=CALB2 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001318 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051001 all species →	Family	Calbindin Calcium-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19972 all species →	CALBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23908	CALB2; calretinin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068675167.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

167.2Max TPM

80.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	80.41	167.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	167.20
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	164.91
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	150.57
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	145.77
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	135.98
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	125.29
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	124.10
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	122.74
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	122.56
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	120.77
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	113.31
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	106.03
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	105.36
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	102.46
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	101.77
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	96.98
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	96.76
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	85.43
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	84.11
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	80.32
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	77.65
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	75.02
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	68.96
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	67.85
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	62.72
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	57.78
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	57.36
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	55.29
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	19.80
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.