Gene detail

Detailed information of XP_068675294.1 in Montipora foliosa

Genomic Location: chr10:5205326...5225265
NR annotation: XP_044164076.1, eukaryotic translation initiation factor 2D-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068819193.1

AGGTTACGCGCGGTAATTAACATGGCGGTACAGTGTACAAAaaatctttttctttcctcAGCTCAAAATTCTGATATTTGACCGAGATACAAAGTGCAGATTGTCATGTTCCTGAAGACCTTTAGAGTAAAGTCAAGTACTGCGATTCGGGGATCTGATCGGCGAAAGCTCAGATCAGATATAAGTAGAGCATTCTCCAGCTTATCACAGGATGACTTGTCAGATTTAATTCCAAACAAAGAAGAGATAACTGTGATGAGGATTATGACTCATTCTGGACAGAATATTACCGTTTATTGCCACAATGGGGAACCAATATTCTTTGAAATGGATAGGCAGGTGATCCCTACAGTTTACACCCTATGGAGATTCCCAGGCATGTTGCTGAGCTTCACAACTTGGCCTCTTGTATTTGACAAATTGAAAGGAGGAGCAGACTTAATGCTTCCTGGTGTCATATTACCATCCAGTGGGGTGTCATCATTTGGACAATTTGACAAGGGAACAATCTGCAGTGTGTGTCTCAAAGGGAACAGAGCCCCCATTGCAGTTGGCGTAACTTTGGTGTCCAATAGGGATCTGATGGAGGATGGTATGCGTGGCAAAGGAGTCATGATTTATCATGTCTACACGGATCTTTTATGGGCACAAGGAAGTAAGACTCCACTACCTCAACTGGCTTTATACGATGACAAAGTTAATGGTGATGATACAATTGAAGAGGTTGTACAGTGGATTTCAATCAATGCAGAGGAGGAGAATAGCAGTAATAAGGAAAATTCAGAAAGTCCTCTTAGAGAAGAATCTGCAACCGAGTTGAACAAAGAGAAGAAAGATGATTGCCCTGAAGAACAGTTTGACAGTGATCCAAATCTATCAGAGGGTGCTTGTAACACAGTTGACGAGGGGGATGAAAGACAAGttgctgaggcaaataattcagTGGAAGGGGCAAACCCCGAAGAATCCTCTCTCAACAACATGGATAACCTTCTCGAGTACTGTTTCTTTTGTTCGTTGTTAAGGATGAAAAAGATTGAGTTGCCTGTTCTAACTAACTCGTATTTTAAGAGTTATCTGCTGCCTTCCTGtcCTGAaggaaaatcaataaatatcaaGAAGTCATCGTACAAAAAGTTGTCTAAATTCCTACAATGTATGCAAGAAAGGGGTTTGATCTTGGTACAAGAAGCATCTAAAGGAGTTGATCACATTACCGAAATAATATGGAATCATCCAGAATTAAAGGAATTTAAAGTGAACCAACCGATGGTTGAGTCTTCGACACAACTGGTGGCCTCATCAACTGCGCAAGCTCAACCTCCTCATATAGAAGAACTGTTCTCTGTGTCAGCAGCAGTGTTACCAATATTTTCAGAACTTGGATATAATAAAAGTTCTGTGTTGAGTCCATCAGACGTTCGCTCAGTTGTCACAAAGTATGTGAAATCACACGAGCTAATCTCTACTGAAGACAAGAGGATGGTTATGTTAGATCCAGCACTTACCAAAATGCTCATAAACAAAAACGAAGTTGTAGATTTTTTACCGTGGGATCAACTTTTCGAAAGagtttttaataaaatgaaCAATTGTCATCAAATTACACTTCCAGGACAAGATCCTGTAATAAGGAAAGGGAAGATTGAAGCTATTGAAATCAAAGTGGAACAACGGATGGGTAACAAAAAGGTGACGTTGATTCGCTACCTTGAATCATACGGTATTGAACCACAGGATTTTGCTCACAAGATACAGATAAAGGCAGCTTGCAGCACATCAGttACTCAGCTCCCTGGTAAAAATAGCAATCCCGGAATGCAGGTCTTGGTTCAAGGCAACCAAGTCGCAATAGTCGCAAGATTTCTTTTAGATGAATACAGAATCCCTAAGAAGTACATAAATGGACTTGAACTCAAagataaaaagaagaaaaaataattcacTTAGAGAATAAAGCGGTATAATTACTTTTTATACGCACTGCTCTGATAGTGTTGTTCTTTATGGCATTGTTCGGTTCTTCGGTTACTCCATTACTTTTCACCACagtacaagtacatgtagtcTACCCTTTCTTTCTATTTATTGACAACTAAGATGGCAGAATGGCGCGCTTTTGCCAACTTTAACGAAAGTTCTTCTGGTGAAGATGACATACAAACAGCTCAAGTCTTCTTTCAGGACTGCACGGGTAGTTCTTTGTATAGATGGGAGTGCCCTTTCGGAAGAAGTCCATTTTTTTAACAGAATGCGGCAGCATACGAGACGAGGCACCTCTCTAAAAAGGATGATAGGCTCTGGACAGTGACGCCATCAGGGACTCCAAAGAAAATCTTCACTGCCTCAACTTCAGTCAAGGGTTTCATCTAAAGTTCGAGCGAGATCGGGACATCTTGGTGAAAGCGAGAGTGTCGGAACCACTTGCTTTATAATTGCACCACCATGGAAGAAAAACGAGATCGTCTTAAAAAGAAACTCTTTTCGAGTAGGTGTTTTTGCACGGCCTACGGAAAGAGTCATCTTTGGATCTGGTAATTACTAGGATTTTTTTTGAGGCGAAAAATTCTTTTAGGACGTTTTCAACTGGGCTTGATATCGTTTTAAACCAGCGACACAATTGTTTCAATTCATTACATATACATTCTACCACTCTACAACAacattttcgtccaaatgaATTACGTTATTTTGTTTCCTCTTGACAAATTTTTAGTGCAAGTACATCGCCGTTTTCTCTTCTTGTTCCCTTTATTTTACTCCCTTCCTTCAGATAGTCTTGTGGACTAAACTCCACATCGAAGAATGGGGAAAATAACCACTGGGGAACCCAGAGGAAAAATTAGCCAACTGCGTTCGTTCACCGATTTTTTCCCCCtttattttctagttttttcCTCGTTTTTCCCACAAAGGAGCCTTTTCCGAGGCTATCcgtgaaaaaaaattgagtaaATGATGATACAGAACTTGTCATCCTCTCAACTTTTGTATCTTGTTCATGGTTAAGTCAGCCACATAGCACATGCTAAAATCGTATCATGATGCTAAATTGAGaattgaaaacaataaattCTAATCAAAATCTTCATAAGAAAATAGTGCAAACTAAAGTAGGCTAACAGTCAACATACaaacatttggttttatcaacggagttgataatgtaaattggccaccgtacagagattctaaaagctgacgtttcgagcgttagcccttcgtcactACTTTGCGGGaactgaaatttaaaaagacCTCCCATCTTCTTTGAAAGACTCCAGTGTGTTTGCATTCTAAAACGTTATCCTTTGTCCATATAAGAagtaaattttcttttgtttgttttgccttAGATATTATTATCTGATTTTCACCTATTTCCTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41214	Eukaryotic translation initiation factor 2D OS=Homo sapiens OX=9606 GN=EIF2D PE=1 SV=3
Q5RA63	Eukaryotic translation initiation factor 2D OS=Pongo abelii OX=9601 GN=EIF2D PE=2 SV=1
P0CL18	Eukaryotic translation initiation factor 2D OS=Oryctolagus cuniculus OX=9986 GN=EIF2D PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003810 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01253 all species →	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF17832 all species →	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036877 all species →	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR003121 all species →	Domain	SWIB/MDM2 domain	Interproscan
IPR036885 all species →	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR001950 all species →	Domain	SUI1 domain	Interproscan
IPR039757 all species →	Family	Eukaryotic translation initiation factor 2D	Interproscan
IPR048247 all species →	Domain	Eukaryotic translation initiation factor 2D, N-terminal domain	Interproscan
IPR048248 all species →	Domain	Eukaryotic translation initiation factor 2D-like, PUA RNA-binding domain	Interproscan
IPR039759 all species →	Domain	Eukaryotic translation initiation factor 2D, SUI1 domain	Interproscan
IPR041366 all species →	Domain	Pre-PUA domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12217 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15027	EIF2D; translation initiation factor 2D	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068675294.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

19.1Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	7.50	19.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	19.07
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	14.84
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	13.90
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	13.90
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	11.86
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	11.67
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	11.52
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	11.39
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	11.32
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	10.92
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	9.91
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	9.42
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	9.20
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.99
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	8.63
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.59
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	8.32
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	8.29
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.20
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	8.02
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	6.84
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	6.79
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	6.61
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	6.61
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	6.52
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.49
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.36
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	5.12
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	2.71
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.