Gene detail

Detailed information of XP_068676016.1 in Montipora foliosa

Genomic Location: chr10:30810833...30834263
NR annotation: XP_029206898.2, sterol carrier protein 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068819915.1

CTGGGGTGAGCCGCCTGTTCGAACAGGTCTTGAGTTACGGGGCTTGGTTTGGTGGCGAAATTTGTAAGATTTTTGACAATGCCAGGAGGAAAAGTGTACGTAGTTGGAGTTGGTATGACCAAGTTTGAAAAACCTGGTCGCCGTGATGACTTTGATTATCCTGATATGGCCAAAGAAGCAGGAATGAAAGCTCTCCAAGACTCTGGGTTGGACTATAGCAGTATAGATCAGGCTGTTGTAGGTTATTGCTATGGTGACTCAACTTGTGGACAGAGAGCTCTGTATCAACTTGGCTTAACTGGAATTCCAATTTACAATGTTAACAATGCTTGTGCAACGGGATCCAGTGCATTGTATCTTGCCAAACAGATGGTTGAAGGAGGCATTTCAAATTGTGTGTTAGCATTGGGCTTTGAGAAAATGGAGAAAGGATCTCTGGCTTTAAAGTATAAGGATCGCACCCAACCGATGGACAAACATTTTGAAGTCATGGTAAATAAAGATGGAGTGGTTGCTGCACCAATAACTCCCCAGTTGTTTGGAAATGCTGGCAGAGAACACATGGAGAAATACGGAACCAGACCTGAACATTTTGCCAAAATTGCACACAAGAATCATCTTCACTCAGTAGAAAACCCCTTATCTCAGTTCCAAACGAAGTACACTTTGGAGGAGATAAAAAATGCACCCATGGTGTTTCAACCTTTGACCAAACTACAGTGTTGCCCCACATCTGACGGAAGTGCTGCAGCCGTTCTGGCAAGTGAAGAGTTTGTCAAAAGGCATGGCCTGGAAAGTAAAGCTGTTGAGATCGTTGGAATGGAAATGGCTACAGACTTCAGCAGCACCTTTAAAGAAAATAGCTCAATCAAGTTGGTTGGTTATGACATGACGAAGGCGGCAGCTGAGAGGTTGTATCATAAGACTGGTTTGTCACCCAAAGACGTTCAAGTTATTGAGTTGCACGATTGCTTTTCTGTTAATGAACTGCTGACTTATGAAGCCTTGGGTCTCTGTACGGAAGGAGAAGGGGGCCAATTGGTTGACCGAGGAGACACCACTTATGGAGGAAGGTGGGTCGTGAATCCGAGCGGAGGACTCATTTCCAAGGGACACCCTCTAGGAGCAACAGGCTTAGCGCAATGCACGGAACTTTGTCGCCAGTTGCGGGGAGAGTGTGGCAAGAGACAAGTTCCAGGTGCTCGCGTGGCGCTTCAGCATAATCTTGGACTGGGTGGAGCTGTTGTAGTAGCGTTGTATCGGTTAGGATTCCCAAATCAGAGGAGGTATCGTCCGGTCCCCTCTTACACCTCGGCCGTTACGAAAGAGGATTTCAAGGCGGCGGCCATATTTGATGAGATTGAGAAGACGCTGAAGACGGAGGGTCCACAACTGGTTAAGAAGATCAAAGGAGTCTTCAGagtcaacattaaaaaaaaagacaatcaGGAAGCTTGGTGGATTGTGGATGCGAAAAATGGAAACGGCGCGCTCAAGTTTATGGCGCAAGACAAAGCTGATTGTACAATCACCATGAATGATGACGACTTTGTACAACTTATGACTGGAAAATTGAATCCTCAGACGGCGTTCTTCAAAGGCAAGCTCAAACTTAAAGGAAACATGGGCCTGGCCATGAAGCTGCGAGAAATTCAACCCAAAGCTGGAAAATCCAAGTTATAGATGGATGGATGACCAATGCGATTATTGAAGTGGATCAACGAACTTATGTGCGAAGGATAATTGTTTACTAAGTGCAGACGTTAATTaagaatgacaaagaaaaaataagggTTATGTAGGGTTATCAACCAAGGATATCCCTCGGGTTATGTGAATTGTAATGAAGCTTTTTTGGATGCAATCGGAACGGAGGTGTTTCTTGTGACGTCTGACTAAGCACGTGCACGCTTGATTTTCctgaaaatcaaaattttttaaagtgctactatgatccaATTTTTATCTCTTTAAGTTTTAGGTTTATCACATGGAATTCCAGGAAAGAGTAAAAACGCCTttttccgtttggaaatatcagcattggttccggagatatttaagtttgaaaaatatgtgaaatatgcaaatgagaggaGTGGTGACGTCAGTCACTTAACCTAATAtaacatcaagtatataaatagagctatttCGGTCAA

Protein

Uniprot

Uniprot term	Description
P32020	Sterol carrier protein 2 OS=Mus musculus OX=10090 GN=Scp2 PE=1 SV=3
O62742	Sterol carrier protein 2 OS=Oryctolagus cuniculus OX=9986 GN=SCP2 PE=1 SV=1
P11915	Sterol carrier protein 2 OS=Rattus norvegicus OX=10116 GN=Scp2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00108	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF02036	SCP2	SCP-2 sterol transfer family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020613	Conserved_site	Thiolase, conserved site	Interproscan
IPR020616	Domain	Thiolase, N-terminal	Interproscan
IPR036527	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan
IPR020615	Active_site	Thiolase, acyl-enzyme intermediate active site	Interproscan
IPR003033	Domain	SCP2 sterol-binding domain	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42870	ACETYL-COA C-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08764	SCP2, SCPX; sterol carrier protein 2	EC:2.3.1.176	PPAR signaling pathway	ko03320	deepkoala