Gene detail

Detailed information of XP_068677758.1 in Montipora foliosa

Genomic Location: chr11:16876516...16888604
NR annotation: XP_029194195.2, uncharacterized protein LOC114960111 [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137974714

ATGGCATTACGATTGCATAACACAAGGCGTCTAGACGACAACACGACCTGTTTCAGTTTCATCTTTGAAGACTTTTCAAGCATTGGAGCAAGTGTGTACTCGAAGCCGTTCAATTTCGCCGCATCAAGGTGGCGTTTGCAAGGCGGCATCAAAGGAGGAAAGTTCGGTGTGTTCTTAAGGTGGCTCGGCGGTGGCCAGTACAATGATAAAGTAAAATGCAAGATTCGATGCACATTAGAAGTTATCAATAACAGGGACCCGTCTAAGTCTGTGAGAGCTGGGAACGCAAACGACGTTGACGAGTTTCCTAAAGTTGGGTTCGGAGTCGGCTGGAGTTCCTTGATCACAACAGAGGAAATCCAGAGGCTCGATTCAGGGTTTTTGGATGAGAACAGTTTGTTCGTTGAGATCAAATGTTCACCTGTCAATATTGTTTTTGAAGACAAATTGGTTATAAATGTGTCATCTCGCACAAGCTATGTCACTAGCTCAAAGTTTTCTTTGCACGGGGAAGAATGGTATCTGGTGCTGTACCCAAAAGGAGAGCCAAGAGACAACAACGAACCAAATGCTGACTTTGCGGCTGCATACCTGCATAGGGAAGAGCCTTCCATGTTAAGATTCAAAGCCACCTACTCCATTTATGTGCGCGGAGGTCGCGAAGTACAAGTGACTCATCATTTCTGCGACAGCAATGCCAGCACAGCGTTTGGTATCGAGAAGTTTGTTCGCAGCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGGTATCAATCGGTGTAAAGATCACAAGCATTGATCCTTATTATTATTTTGGTTTCGACACCACAAACTGGTCTCCACCCAACAACATGGGCAATGAGTGCTTCATTGATGATGCGTACCCTTTAGCATTCAAACCCGGATCCAACGATAAAAAAACGCTGGATTTTAGCTTAATGTTCGATCCAAAGAGCAAGCACGCAGATTTAGAAGATAGCGCGTATTACGTGAAGATTCAGTGGAGTGTTCGTTTATTTTGCTTTAAGGATGACAACAGAAGCGTTACGGGGAACTCGTGGGATGTTCCCGGCAGAAGTGCATTCTGTTTTAGTCAAGATGAGATGACTATGAACACTAGTTTGGAATTGAACGAGGTATTAAACCCTTACAGCCCGTACTTGGATGATGAGAAACATTTGTGTGTTCAGTTGATGATTAAAAACACCAACGAAGTTTACGATCCATTATTGATTAACTCGGACAAACACAGCGTCGCAAAGCTGAGGGAGATGAACGCGCAAACAAAGGCAGCAGTTGAAAAGTTTTGGAAATTTCAATTGGAAAACGCGACAGCCGAGAAGGATCAGCTTCTGGCAGATAAAGATGAGGAATTAGCAGCCAGAGAAGAGGAACTAAAGCAAAAAGAGCAAGCGATTCAAGCTCTGGAAAAGGAGATCAGTGAAAGCAATGAATATCTGGCTGAGATCGAGAGCACGGTAGATGAGATTGATGGCAAGAAAGTTAGCAGCATTAAAGATCTTGTGCAAGAAGCTCAACCGGAGCAGGAACAACTTCAAAAACAGCAGGAAGTTGCCGAAAAATTGAAAGCCTTCATGATGGAACACTTGCCATTTACTGTAAGCCGTATTTCAGTGGTTGGTAGCGCCGGACAGGGTACAAGCATCAAAGGATACCAGGAACTCGACTTAGCAGTCTTTGTAAAAGACCTTCCCAGAACCGAACACAAGAGTTGGTTGCCCGCAATAGTTTTCACCTTTAAAACACTCTTGAAACAAGAAGGATCCAGATCAGCTGAAAACAGTGATGATGAGCAACTCACAGCCACCAAATTGCCACCATGTTTAGACTTTGTGACAACGCAGACAACTGTTGAGTTCAAATGCAACAATGTCAATGTTGTGGTGATGCCAATCAACGACTGGGAGCCAATAGGAGGCTTTGAAGCTTTATACAAACAGAGCATGAGTCAACCAGCAGATGGACAGATGTTTTATAATGTGGCTGTCTGTGAAAGACAAACTGAGTTCATTTCCAAGCAGAATCCAAAGTGCAAGGATCTGATCCGGATTGTTAAGAACTGGACTAACACTGTTTCCTGGCGCAATACCTCATCAAAACCGAGTCATTACTTACTGTCATTATTGATCACAGCTGCTTATCAAGTGGTCAATGAGGGAGGTGAAACTGAAGCAGTAAGAGCAGACAAGGATGTGTTTTTGGAATTGGCAGACATGGTTGGTGATGAATCATTAGAAGTATTTTGGAATGAGTATTACCTGGCAGACGACTATCCACGTGAACATCATCCAATCGCATTTAAGCTACCAATTGTTCAGGATCCTGCCATTCCAACACACAATGTTGCATCTGTTGGACTTGAGGACTGGGCCCAATTTAGGAGAGAGCTGTCAAAATGGGTTGCAAAGTTGACTCTTTAG

Transcript

rna-XM_068821657.1

CAAATAAATATAGAACGCAAAATAAGACGGTAAAAGGCGAAAGTACTTGAAATGCACGCTGACTAACAGCATATAAACAGTCGTGTATTTACGTtttcttcattaatttttaaaaagccTCGTAGCACAACTGCAGGTTTCCAAACAGTGTATCGTTGGAAAGATGGATTCTGAAACGCAAGAAGAAACTCCAACTTCAACGTGCTGCATTGCTGTATGTTTTGAACGCATTATTTCTAAGCTGATTGAGGCAACtccaaaatacatgtattttatcctGGCGGCTGACGGCTGAGTCACATATCAGAAGTGCCTGCTTTCCTTATGCGAGTTTTTCCACTTCCGAGCTGGAGAGAAGCTCGTGCAAGAGTGTGCTTTAGAGACAAAAAAGTGAGGAGATTGAAAGTTTGAAGGCAAGATGGCATTACGATTGCATAACACAAGGCGTCTAGACGACAACACGACCTGTTTCAGTTTCATCTTTGAAGACTTTTCAAGCATTGGAGCAAGTGTGTACTCGAAGCCGTTCAATTTCGCCGCATCAAGGTGGCGTTTGCAAGGCGGCATCAAAGGAGGAAAGTTCGGTGTGTTCTTAAGGTGGCTCGGCGGTGGCCAGTACAATGATAAAGTAAAATGCAAGATTCGATGCACATTAGAAGTTATCAATAACAGGGACCCGTCTAAGTCTGTGAGAGCTGGGAACGCAAACGACGTTGACGAGTTTCCTAAAGTTGGGTTCGGAGTCGGCTGGAGTTCCTTGATCACAACAGAGGAAATCCAGAGGCTCGATTCAGGGTTTTTGGATGAGAACAGTTTGTTCGTTGAGATCAAATGTTCACCTGTCAATATTGTTTTTGAAGACAAATTGGTTATAAATGTGTCATCTCGCACAAGCTATGTCACTAGCTCAAAGTTTTCTTTGCACGGGGAAGAATGGTATCTGGTGCTGTACCCAAAAGGAGAGCCAAGAGACAACAACGAACCAAATGCTGACTTTGCGGCTGCATACCTGCATAGGGAAGAGCCTTCCATGTTAAGATTCAAAGCCACCTACTCCATTTATGTGCGCGGAGGTCGCGAAGTACAAGTGACTCATCATTTCTGCGACAGCAATGCCAGCACAGCGTTTGGTATCGAGAAGTTTGTTCGCAGCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGGTATCAATCGGTGTAAAGATCACAAGCATTGatccttattattattttggtttcGACACCACAAACTGGTCTCCACCCAACAACATGGGCAATGAGTGCTTCATTGATGATGCGTACCCTTTAGCATTCAAACCCGGATCCAACGATAAAAAAACGCTGGATTTTAGCTTAATGTTCGATCCAAAGAGCAAGCACGCAGATTTAGAAGATAGCGCGTATTACGTGAAGATTCAGTGGAGTGTtcgtttattttgctttaagGATGACAACAGAAGCGTTACGGGGAACTCGTGGGATGTTCCCGGCAGAAGTGCATTCTGTTTTAGTCAAGATGAGATGACTATGAACACTAGTTTGGAATTGAACGAGGTATTAAACCCTTACAGCCCGTACTTGGATGATGAGAAACATTTGTGTGTTCAGTTGATGATTAAAAACACCAACGAAGTTTACGATCCATTATTGATTAACTCGGACAAACACAGCGTCGCAAAGCTGAGGGAGATGAACGCGCAAACAAAGGCAGCAGTTGAAAAGTTTTGGAAATTTCAATTGGAAAACGCGACAGCCGAGAAGGATCAGCTTCTGGCAGATAAAGATGAGGAATTAGCAGCCAGAGAAGAGGAACTAAAGCAAAAAGAGCAAGCGATTCAAGCTCTGGAAAAGGAGATCAGTGAAAGCAATGAATATCTGGCTGAGATCGAGAGCACGGTAGATGAGATTGATGGCAAGAAAGTTAGCAGCATTAAAGATCTTGTGCAAGAAGCTCAACCGGAGCAGGAACAACTTCAAAAACAGCAGGAAGTTGCCGAAAAATTGAAAGCCTTCATGATGGAACACTTGCCATTTACTGTAAGCCGTATTTCAGTGGTTGGTAGCGCCGGACAGGGTACAAGCATCAAAGGATACCAGGAACTCGACTTAGCAGTCTTTGTAAAAGACCTTCCCAGAACCGAACACAAGAGTTGGTTGCCCGCAATAGTTTTCACCTTTAAAACACTCTTGAAACAAGAAGGATCCAGATCAGCTGAAAACAGTGATGATGAGCAACTCACAGCCACCAAATTGCCACCATGTTTAGACTTTGTGACAACGCAGACAACTGTTGAGTTCAAATGCAACAATGTCAATGTTGTGGTGATGCCAATCAACGACTGGGAGCCAATAGGAGGCTTTGAAGCTTTATACAAACAGAGCATGAGTCAACCAGCAGATGGACAGATGTTTTATAATGTGGCTGTCTGTGAAAGACAAACTGAGTTCATTTCCAAGCAGAATCCAAAGTGCAAGGATCTGATCCGGATTGTTAAGAACTGGACTAACACTGTttcctggcgcaatacctcatCAAAACCGAGTCATTACTTACTGTCATTATTGATCACAGCTGCTTATCAAGTGGTCAATGAGGGAGGTGAAACTGAAGCAGTAAGAGCAGACAAGGATGTGTTTTTGGAATTGGCAGACATGGTTGGTGATGAATCATTAGAAGTATTTTGGAATGAGTATTACCTGGCAGACGACTATCCACGTGAACATCATCCAATCGCATTTAAGCTACCAATTGTTCAGGATCCTGCCATTCCAACACACAATGTTGCATCTGTTGGACTTGAGGACTGGGCCCAATTTAGGAGAGAGCTGTCAAAATGGGTTGCAAAGTTGACTCTTTAGTTAGTTGCATAGTTGCCTGGAAAGAACTTCCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258 all species →	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001730 all species →	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060700 all species →	Biological Process	regulation of ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068677758.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068677758.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

24TPM > 0

1Conditions

17.1Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	24	2.47	17.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	17.15
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	8.72
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	7.43
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	5.05
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	3.96
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	3.73
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	3.60
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	3.59
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	3.53
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	3.51
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	3.35
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	3.03
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	2.68
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	2.27
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	2.26
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	2.24
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	2.09
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	2.07
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	1.98
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	1.80
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	1.48
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	1.48
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	1.43
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.62
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	0.00
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.00
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.00
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.00
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.