Gene detail

Detailed information of XP_068678024.1 in Montipora foliosa

Genomic Location: chr11:24183334...24189538
NR annotation: CAH3032350.1, unnamed protein product, partial [Porites evermanni]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SA47	Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis OX=45351 GN=v1g168210 PE=3 SV=1
Q5PPY6	Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis OX=8355 GN=eif3h PE=2 SV=1
Q6P381	Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis OX=8364 GN=eif3h PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008519 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF19445 all species →	eIF3h_C	C-terminal region of eIF3h	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR027524 all species →	Family	Eukaryotic translation initiation factor 3 subunit H	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR045810 all species →	Domain	eIF3h, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016282 all species →	Cellular Component	eukaryotic 43S preinitiation complex	Interproscan
GO:0042788 all species →	Cellular Component	obsolete polysomal ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03247	EIF3H; translation initiation factor 3 subunit H	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068678024.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

221.6Max TPM

112.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	112.08	221.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	221.58
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	212.22
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	203.50
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	182.81
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	180.73
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	180.55
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	179.24
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	167.95
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	164.07
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	162.21
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	149.44
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	147.47
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	143.24
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	131.75
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	122.67
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	119.98
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	118.77
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	116.15
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	115.90
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	108.89
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	108.44
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	108.15
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	104.43
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	99.78
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	96.90
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	91.63
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	91.49
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	89.41
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	85.63
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	29.94
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.