Gene detail

Detailed information of XP_068678043.1 in Montipora foliosa

Genomic Location: chr11:13424712...13457811
NR annotation: XP_029194064.2, chloride channel protein 2-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137974932

ATGATGATGGAAGAACAGGATACCTACGGATTTGAGGAGACTCTGATGTATGGCCGTTTTACAACCACAGAGCTGCAGAAGTATGCTAAAGAACAAGGAGCAAGGCTGCGCCGTGAGCAGCTACGACAGCGAGAGCAAGAGGAGCAAACAGATGATGAATTCAGAGTTTACAATGGCTCCTGTCTTGCTTCTCTTAAACGGGCTGGTGTTTGGTTACAACCCTGTTGGAGTCGTCTAGGAAGTGATTGGGTGTTCTTGTTGATTCTTGGAATAGTAATGGCACTGATTAGCTCTGTGTTGGACTTGGCAATTGCAAAATGCGAAACTGCACACATTTGGCTTTACAGTTTGCCTGGAAATACCTTTGTTCAGTATATTGTATGGACTTGTTTTCCTTTAATCCTTATATCTTTTTCTGTTGGATTCACGTACCTCATTTCTCCTCATGCTATTGGATCAGGAATTCCTGAGATGAAGGTCATTTTAAGAGGCACTGTATTGAAACGCTATTTGTCACTTAGAACATTAGTAGCCAAAGTGTTTGGGCTCCTCACAGCACTGGGAAGTAGTGCTCCAATTGGTAAAGAGGGTCCTTTTGTTCACATTGCAAGCATGGTGGCTCGCTCGATGGGGAAGTTTGTGGCATCATTTAAAGGAATATATACGAATGAGTCAAGAAACACTGAGATGCTTGCAGCTGCTTGTGCTGTTGGTGTATCAAGTTGTTTTGGGTCTCCCATTGGAGGGGTACTTTTCAGTATTGAGGTAACAGCTACTTACTTTGCTGTGCGGAATTACTGGCGAGGATTCTTTGCTGCTGTCTGCGGAGCACTGATGTTTCGTCTTCTAGCAGTGTTAGATAAAGAGGAAGATACTGTAACAGCTCTATTCAAAACCAATTTTAGACTGGACTTCCCTTTTGATGTGGTAGAATTCGTTGCATTTGCTTTAATAGGGCTGTTTTGTGGCTTCGGGGGAGCTCTCTTTGTGTTTACACACCGGAAGCTGGTTGAATTCGAGAGGTCACACAAGCAAACCACAGTGGCAAAATATCTGTCAAGAAATCGTTTTGTGTATCCAGTTGCTGTGATGTTTGTTATTGCTACACTCACATTTCCTAAAGGATTAGGGCAGTTTATGGCAGGAGAGCTGACATCCAAGCAAGCCATAGATGAACTGTTTATTAATATCACCTGGTCTGAAGCAAGGAACTCTGAAAATGAAGCCAGTCTGAAAGTGTTAGAGCACTGGGATGGTGCTAATACAAATATCTATGTCACTTTGGTCATTTTTATCGTCCTCAAGTTTATTATGACCGCAGTGTGTGTAGCGTTACCTATACCTGCTGGTGTTTTCTTCCCTGTCTTTTTAATTGGTGCTGCATTTGGCCGTCTTGCGGGTGAGGCAATGGCCACATGGTTTCCAGATGGCGTGAGCTCAGGGGATACCTACACACCCATTGTTCCTGGGGGATATGCTGTTGTTGGTGCGGCAGCACTTTCAGCAGCAGTTACCCACACCATTTCTACATCTGTGATTGTCTTTGAGCTAACTGGACAAATCACTCATATTTTGCCTGTCATGATTGCTGTGTTAATAGCCAATGCCATAGCACAATGGTTGCAGCCATCATTTTATGACAGCATTATTCAAATCAAAAGATTACCATACCTTCCTGACTTGACAAAAACACAGGTATACAATTTGCTTGTAGCTGATATAATGAAAACCAATCTCTACTTCATCTCGTATCATTCAAAATATGCGGACCTCAAAGAACTGCTAGAAAAGTCTGATCTCCGTTCATACCCACTGGTGGATTCTGAAGATTCTATGATCCTTCTTGGATCAATTCAAAGACCTCAACTTCAGTCATTACTAAATCAACACATGCAAAAGATGATGCAAGCTAGCAGTCAGGCAGAGAGTGAGGGAGCTGTGTGTACAAGACCAGATACTCCAGACTCACTGGCCAGTGACAAAGGAAACAATTCACAGTCTCTGCAAGTAAGCCTTGACGTTTCGGCAGAAATAACACAGGTTACAAGCCCGTGTTCCTCAAGTGGGAAGTCTTTGCTAGATAAGATTCCAGTTCCAGCAAGACTACACAAACTATTTGGCAGTGGATCAGCCCTAAATGATGCTGAGCAGAAGATATCTGATGCTTCTGAAAGAGAGTGTCCCTCAGTAGAACAGCAAATTCAGTGGGAAAGAGAATTGCTGCAGAGAACAGTAGATTACAGCAACTGCCAAGTTGATCCTGCTCCTTTTCAGCTTGTTGAGAGAACATCTTTACTGAAGGTCCATAAGCTTTTTGCACTCTTGAATCTTTCTCATGCTTATGTCACAACTCTTGGCCGACTTGTGGGTGTGGTTGCCCTGAAGGAGGTTCGTAAAGCAATTGAGGGTGAACGTTTTCTGGACTCAACACATGTAGATGCAGTACAATTCAGCGAAGCCTTCATGACAGGTCATGTTCAAGATTCCATGATACAACAACATGCGAATCACCAGTCCAACCCAGATGATGAAACAGATCCCAAACTCTAA

Transcript

rna-XM_068821942.1

GGTACCATACCCCAATACCGAACGATTCGTACGTGGTGTGATGTTCAGAGGTTGTGGTCGAAGAAGGAagattttccttttaatttaaGGGCTCTTTCGCCTTTCTTGAATCATGATGATGGAAGAACAGGATACCTACGGATTTGAGGAGACTCTGATGTATGGCCGTTTTACAACCACAGAGCTGCAGAAGTATGCTAAAGAACAAGGAGCAAGGCTGCGCCGTGAGCAGCTACGACAGCGAGAGCAAGAGGAGCAAACAGATGATGAATTCAGAGTTTACAATGGCTCCTGTCTTGCTTCTCTTAAACGGGCTGGTGTTTGGTTACAACCCTGTTGGAGTCGTCTAGGAAGTGATTGGGTGTTCTTGTTGATTCTTGGAATAGTAATGGCACTGATTAGCTCTGTGTTGGACTTGGCAATTGCAAAATGCGAAACTGCACACATTTGGCTTTACAGTTTGCCTGGAAATACCTTTGTTCAGTATATTGTATGGACTTGTTTTCCTTTAATCCTTATATCTTTTTCTGTTGGATTCACGTACCTCATTTCTCCTCATGCTATTGgaTCAGGAATTCCTGAGATGAAGGTCATTTTAAGAGGCACTGTATTGAAACGCTATTTGTCACTTAGAACATTAGTAGCCAAAGTGTTTGGGCTCCTCACAGCACTGGGAAGTAGTGCTCCAATTGGTAAAGAGGGTCCTTTTGTTCACATTGCAAGCATGGTGGCTCGCTCGATGGGGAAGTTTGTGGCATCATTTAAAGGAATATATACGAATGAGTCAAGAAACACTGAGATGCTTGCAGCTGCTTGTGCTGTTGGTGTATCAAGTTGTTTTGGGTCTCCCATTGGAGGGGTACTTTTCAGTATTGAGGTAACAGCTACTTACTTTGCTGTGCGGAATTACTGGCGAGGATTCTTTGCTGCTGTCTGCGGAGCACTGATGTTTCGTCTTCTAGCAGTGTTAGATAAAGAGGAAGATACTGTAACAGCTCTATTCAAAACCAATTTTAGACTGGACTTCCCTTTTGATGTGGTAGAATTCGTTGCATTTGCTTTAATAGGGCTGTTTTGTGGCTTCGGGGGAGCTCTCTTTGTGTTTACACACCGGAAGCTGGTTGAATTCGAGAGGTCACACAAGCAAACCACAGTGGCAAAATATCTGTCAAGAAATCGTTTTGTGTATCCAGTTGCTGTGATGTTTGTTATTGCTACACTCACATTTCCTAAAGGATTAGGGCAGTTTATGGCAGGAGAGCTGACATCCAAGCAAGCCATAGATGAACTGTTTATTAATATCACCTGGTCTGAAGCAAGGAACTCTGAAAATGAAGCCAGTCTGAAAGTGTTAGAGCACTGGGATGGTGCTAATACAAATATCTATGTCACTTTGGTCATTTTTATCGTCCTCAAGtttattatGACCGCAGTGTGTGTAGCGTTACCTATACCTGCTGGTGTTTTCTTCCCTGTCTTTTTAATTGGTGCTGCATTTGGCCGTCTTGCGGGTGAGGCAATGGCCACATGGTTTCCAGATGGCGTGAGCTCAGGGGATACCTACACACCCATTGTTCCTGGGGGATATGCTGTTGTTGGTGCGGCAGCACTTTCAGCAGCAGTTACCCACACCATTTCTACATCTGTGATTGTCTTTGAGCTAACTGGACAAATCACTCATATTTTGCCTGTCATGATTGCTGTGTTAATAGCCAATGCCATAGCACAATGGTTGCAGCCATCATTTTATGACAGCATTATTCAAATCAAAAGATTACCATACCTTCCTGACTTGACAAAAACACAGGTATACAATTTGCTTGTAGCTGATATAATGAAAACCAATCTCTACTTCATCTCGTATCATTCAAAATATGCGGACCTCAAAGAACTGCTAGAAAAGTCTGATCTCCGTTCATACCCACTGGTGGATTCTGAAGATTCTATGATCCTTCTTGGATCAATTCAAAGACCTCAACTTCAGTCATTACTAAATCAACACATGCAAAAGATGATGCAAGCTAGCAGTCAGGCAGAGAGTGAGGGAGCTGTGTGTACAAGACCAGATACTCCAGACTCACTGGCCAGTGACAAAGGAAACAATTCACAGTCTCTGCAAGTAAGCCTTGACGTTTCGGCAGAAATAACACAGGTTACAAGCCCGTGTTCCTCAAGTGGGAAGTCTTTGCTAGATAAGATTCCAGTTCCAGCAAGACTACACAAACTATTTGGCAGTGGATCAGCCCTAAATGATGCTGAGCAGAAGATATCTGATGCTTCTGAAAGAGAGTGTCCCTCAGTAGAACAGcAAATTCAGTGGGAAAGAGAATTGCTGCAGAGAACAGTAGATTACAGCAACTGCCAAGTTGATCCTGCTCCTTTTCAGCTTGTTGAGAGAACATCTTTACTGAAGgtCCATAAGCTTTTTGCACTCTTGAATCTTTCTCATGCTTATGTCACAACTCTTGGCCGACTTGTGGGTGTGGTTGCCCTGAAGGAGGTTCGTAAAGCAATTGAGGGTGAACGTTTTCTGGACTCAACACATGTAGATGCAGTACAATTCAGCGAAGCCTTCATGACAGGTCATGTTCAAGATTCCATGATACAACAACATGCGAATCACCAGTCCAACCCAGATGATGAAACAGATCCCAAACTCTAAACTACTTCCCCCTCCTACCACCCCTGAGTAAAGAGCACACACACCTAGCTATTCACTGCATTGTTCATCATTTTCATACGCCAAATGTTTGGGAGGTTGAGCAATTGCCACCATCCCTtaggcctggttttcactagtgtTGCAAGCATAAGTACAAGCAGCACACGCAGGtgcatttacttgttgttaattagtgtctattgtttGAACAAAAGGCTCTAATAAACAGcaagctactgagtttgcgtgtgcttgtgcttatgcttgcattaatagtgaaaaccaggctttagcaTGGAGTAAGgtatgcatgtacatgtaggggTGCAAAAACCACATTCATATTtggtaacaaaaaagaaaagtaaagatTTTATATCCAGAGTATCTAATTTGTGCATGTACAGGTGTACGTATACGTTATCTGACTAGATCAATTTCAGTGTAAAATCTGTTACGGTAATTCTAGTCTATTGATCGTTCTGAGGACAATGCAGTCAACTTCTAAAACAATAAGTTGAAGTTGTTCTTTGGTCTTTATTGGTGTTTTGATGCAGCAATGTTGTACTACAGAAGTTaaattagggaacttaagcaacgacgacagcGACAGCAAGGAGAATGTCatccttttccttctctttgataaaatcaatttgtGTGGGTCATGGTTATGTTTTTGCATGGATGGGTCCCTTGGCAAATGTTGCTCAAGCTAACCTTAGTACCTTGGTCATAACCACCAAGGATGAAATCAGTGTGATAGCCAGAATTTTTTTAGGACTGGAAAATTTAACAGATAAAAGAAGTCTCGATTTTTTTGGAAGTGTTAACAAACTTTGATAATTAGACCTACATTTGTATATGTAATACGACAATATTAATTGTGATTGTAGGAAATTGATGTCAGAGTGGAAAGAGTAACTTAAAATCTAGTTGATTCCAATGTAGAGGCTTTAAAAGTAACAAGTTAGCCCTAATGATAAATAGGAATTTTGTTAAAGTGACAGGTACAGTTGTGATGTAAATAATATTTGAAAGTTCACTATCACCAGTGTGATTatgtaaaaaaatgtttaaaaacaaGAGGCAGCAAGGATTCTAAGGAAAATGCAACTTTCACTTTTatgaatgcaaaaaaatatgTTGCTAGCAAAGTGGTTGACATTGATGTGACAACTTGCAAAACTCTTAATCatacaaaagaaaggaaatcttttttacaaactgaaaaaaaatatatgcttCATGAaatcaagcagtcaagaaaTACCTCTTACAAACCGAGTTTGAGGGCCATACTGTAAAATTATGGACCCAAACAAGGATCCGTAATTGTACAGTACAGACCGAGAAAATTAgtttagtaagatatttattacatCTCTATTAAAGGTAATGAGGCTTGTGGGAGTGAAAAGTAGTTGCAGTCAAGCACAAGGTTCAACTGTCACAAAGATTGCCATGCCAAAATCCAGAAAAGcaataaatcttcttggctttttgaaatagttgctagCATtatcaaacagttttacaaggtTATGTAACATAAAAACCTTGCCAGAgaatgttttatcaaaatttcaaattttgcgggCCATTGTGCAGAATACCACCCGCTAATTAAATTGGCCAGTCATAGGGTGCATACTACATGTATCTGAGAGATATGATAAAAGGTCTTATTATGTTGAATTTGATTCCATATTTAGGTTATTTTTATGACATACTGTACACAAGATATTACGTAGTATTTAATAAATTTTGTATTGGTGAATTGAACAACTTGTTAAAAatggaaaacaataaaagttGTGAAGTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51788	Chloride channel protein 2 OS=Homo sapiens OX=9606 GN=CLCN2 PE=1 SV=2
Q9WU45	Chloride channel protein 2 OS=Cavia porcellus OX=10141 GN=CLCN2 PE=1 SV=1
P35525	Chloride channel protein 2 OS=Rattus norvegicus OX=10116 GN=Clcn2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004432 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR050970 all species →	Family	Voltage-gated chloride channel	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45720 all species →	CHLORIDE CHANNEL PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05011	CLCN2; chloride channel 2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068678043.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

57.1Max TPM

19.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	19.14	57.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	57.09
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	53.56
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	39.69
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	32.22
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	31.93
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	31.71
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	29.30
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	25.80
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	24.49
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	23.28
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	23.07
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	22.91
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	20.89
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	20.77
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	20.75
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	20.75
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	20.64
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	20.57
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	20.41
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	19.99
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	19.35
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	17.95
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	17.75
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	17.38
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	16.64
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	16.37
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	10.10
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	8.52
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.28
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.