Gene detail

Detailed information of XP_068678523.1 in Montipora foliosa

Genomic Location: chr11:21087109...21105019
NR annotation: XP_044168792.1, ARF GTPase-activating protein GIT1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC137975331

ATGTCTTTAAGGATGAAGCTACGTCCATCTACAGAAATTTGTGCGGATTGTAGCGCCCCAGGACCAGAATGGGCATCAGTAAATCGCGGAGTTTTGATTTGCGACGAATGCTGCAGTGTTCACAGAAGTTTGGGTCGACACATCTCTCAAGTCAAACACCTTCGACATTCATCTTGGAGTCCAACCTTACAAGCGATGGTTCGGCAGCTTGTTACAAATGGAGCAAACTCAATTTGGGAGCATTCACTCTTAGATCCAAACCAACTGAAAACGGGGCTAAGAAAACCAAACCCTAAAGACCGTGTTCATCCTACCAAAGCTACGTTTATCAAAGCAAAATACCAAAGGCTAGCATTTGTGCCGCGTCTTCCTTGTAAAGATGATGATACCATAACTGTGTCAGATCTCAGCCAGCAACTGCATTCAAGTGTCAGAACTGGAAATCTAGAGACATGTTTGAGACTTCTCTCACTAGGTGCACATGCAAATTATTTTCATCCTGAGAGAAGTAATACTCCACTTCATGTAGCAGCAAATGCAGGACAAGCCCTTCAAGTTGAGCTTCTCATTGTTCATGGTGCAGATCCCACTAAACCAGACATAAATGGGAAAACCCCTGTTGACTATGCTTTAGAGGCTGGCTTCTCTAACATTGCACAGAGACTAATTGAAGTTCAGTTTGAGCTCACAGACAGGCTTACATATTATTTATGTGGCAGGCGACCTGATCATCAAAATGGAGTCCACTACCTTATTCCAACAATGGCAGATAGCCGTTTGGATCTGTCGGATGATGCGAACAAAGCAAAACTAAAACTTCAAGCTTTAAGTCATCATCTGTTTGAAGAGCTTGCCTCAGATGTGTATGACGAAGTTGATAGAAGAGAATGTGATTCAGTTTGGTTAGCTACTCAGAATCACAGTGCACTTGTGAGTGACACCACAACAGTACCTTTTCTTCCAGTCAATCCTTCATTCTCATCTACACGAAACCAGGGCAGACAGAAGTTAGCTCTGTTTAATGCTAAAGAATTTGCTACATTGATTATTGATATACTGAACGACGCAAGGCGGCGGGAGCAGGACTCTAATCCTGACTTGACACAAGGTTTTGTTGAATCCCACATTTTTCCAATTGAAGAAGATGCTTATGATCATGAATATGATGAAGTGCCATCGGATGAGGATGAAGAGCCAGTGGACAAAAATTCAACTCCAGAGAACCCTTCACAAATCATCACAAAAGTTCAAATTGAAAAGGGCACCACCACAAGTTTTGTAGAAGAAGATTCTGTTCCTATGGAACGTTATGCTAAACTTGAGAAAGCTTTGACCACAGCTAATGCACGTGTACAACAGCTTCTTCAAGTAAATTCAACACAGTCTCATGAAATCCAGAAGCTTCAATTAATGGTCCACAAGCTAGAAGATGAGAACAAGGTCCTAAAGAACCAACTAAGTATCCCTAATGGAGACAGCTTCATGACAGTTAGTGACGATAACGTATTTACAGCAAAGGAAGACAGTGATGAGGATGATCATGTTGATATTGATGATATCACACCATATGAATCCCCAGGCTCTCTCCTAAGGAATCGTTCAAATCAGCCGAACCTTCATGGACAAACTGCTGGTTTAGATGCAAATAAAAGTAAAAGAGTCAATCCATATGATAACGTTAAGGAGGATCAAGAAGAACAGGAAGAGGAGAGAAGATACCTTAATGTTGAGGAGATGAGGGAACATGAAAGAATGAGTTCTTCTGATAGTCCTTTTGATGAACAGCTGGATCAGGAAGCTGTTAAGCTGATCAATGCAGCTGACAGTTTAGTCAGTCAAGCCAAAAAGGACTCCAGGGTCGAGGTATCACAAGAGAATGTGGTACAGTGCACAGAGCAAATCACAAAGAAGATTCAAGAGTTACTGCTGTCTGCACAGGCTGGAAGACACAGCAGCTTCATTCCTTGTTCAAGTAATATTTTCACTGCAGTGAATGACATGGCAGATTTGTTTCCAGAGGATCCAGATGTGGATAGCATGCGTGTATCGCTGCAGTTAATGAAGACCAGTGCCGCCAGACTACAGGTGGAATGTAAAAGTGCAGTGTTGCCAGGCAACACTGTCGACATGGCATTTTTGACACAACAGGTCATACAATGTGCCTACGACATAGCTAAGGCAGCAAAGCAACTTGTCACTACATTCTCTGTTGAATAG

Transcript

rna-XM_068822422.1

TGATTTCCTCGAAAAGACACCATCCGTAGATCCGTAGGGAAATGAGGATCTAAAGTATTGTTTGTATTCATCAACTACTATTTACCAAGGAAGCAAGGCTACGTAGTTTTCAGCACCTTTATGGCTTGAATAATGTCTTTAAGGATGAAGCTACGTCCATCTACAGAAATTTGTGCGGATTGTAGCGCCCCAGGACCAGAATGGGCATCAGTAAATCGCGGAGTTTTGATTTGCGACGAATGCTGCAGTGTTCACAGAAGTTTGGGTCGACACATCTCTCAAGTCAAACACCTTCGACATTCATCTTGGAGTCCAACCTTACAAGCGATGGTTCGGCAGCTTGTTACAAATGGAGCAAACTCAATTTGGGAGCATTCACTCTTAGATCCAAACCAACTGAAAACGGGGCTAAGAAAACCAAACCCTAAAGACCGTGTTCATCCTACCAAAGCTACGTTTATCAAAGCAAAATACCAAAGGCTAGCATTTGTGCCGCGTCTTCCTTGTAAAGATGATGATACCATAACTGTGTCAGATCTCAGCCAGCAACTGCATTCAAGTGTCAGAACTGGAAATCTAGAGACATGTTTGAGACTTCTCTCACTAGGTgcacatgcaaattattttcatcCTGAGAGAAGTAATACTCCACTTCATGTAGCAGCAAATGCAGGACAAGCCCTTCAAGTTGAGCTTCTCATTGTTCATGGTGCAGATCCCACTAAACCAGACATAAATGGGAAAACCCCTGTTGACTATGCTTTaGAGGCTGGCTTCTCTAACATTGCACAGAGACTAATTGAAGTTCAGTTTGAGCTCACAGACAGGCTTACATATTATTTATGTGGCAGGCGACCTGATCATCAAAATGGAGTCCACTACCTTATTCCAACAATGGCAGATAGCCGTTTGGATCTGTCGGATGATGCGAACAAAGCAAAACTAAAACTTCAAGCTTTAAGTCATCATCTGTTTGAAGAGCTTGCCTCAGATGTGTATGACGAAGTTGATAGAAGAGAATGTGATTCAGTTTGGTTAGCTACTCAGAATCACAGTGCACTTGTGAGTGACACCACAACAGTACCTTTTCTTCCAGTCAATCCTTCATTCTCATCTACACGAAACCAGGGCAGACAGAAGTTAGCTCTGTTTAATGCTAAAGAATTTGCTACATTGATTATTGATATACTGAACGACGCAAGGCGGCGGGAGCAGGACTCTAATCCTGACTTGACACAAgGTTTTGTTGAATCCCACATTTTTCCAATTGAAGAAGATGCTTATGATCATGAATATGATGAAGTGCCATCGGATGAGGATGAAGAGCCAGTGGACAAAAATTCAACTCCAGAGAACCCTTCACAAATCATCACAAAAGTTCAAATTGAAAAGGGCACCACCACAAGTTTTGTAGAAGAAGATTCTGTTCCTATGGAACGTTATGCTAAACTTGAGAAAGCTTTGACCACAGCTAATGCACGTGTACAACAGCTTCTTCAAGTAAATTCAACACAGTCTCATGAAATCCAGAAGCTTCAATTAATGGTCCACAAGCTAGAAGATGAGAACAAGGTCCTAAAGAACCAACTAAGTATCCCTAATGGAGACAGCTTCATGACAGTTAGTGACGATAACGTATTTACAGCAAAGGAAGACAGTGATGAGGATGATCATGTTGATATTGATGATATCACACCATATGAATCCCCAGGCTCTCTCCTAAGGAATCGTTCAAATCAGCCGAACCTTCATGGACAAACTGCTGGTTTAGATGCAAATAAAAGTAAAAGAGTCAATCCATATGATAACGTTAAGGAGGATCAAGAAGAACAGGAAGAGGAGAGAAGATACCTTAATGTTGAGGAGATGAGGGAACATGAAAGAATGAGTTCTTCTGATAGTCCTTTTGATGAACAGCTGGATCAGGAAGCTGTTAAGCTGATCAATGCAGCTGACAGTTTAGTCAGTCAAGCCAAAAAGGACTCCAGGGTCGAGGTATCACAAGAGAATGTGGTACAGTGCACAGAGCAAATCACAAAGAAGATTCAAGAGTTACTGCTGTCTGCACAGGCTGGAAGACACAGCAGCTTCATTCCTTGTTCAAGTAATATTTTCACTGCAGTGAATGACATGGCAGATTTGTTTCCAGAGGATCCAGATGTGGATAGCATGCGTGTATCGCTGCAGTTAATGAAGACCAGTGCCGCCAGACTACAGGTGGAATGTAAAAGTGCAGTGTTGCCAGGCAACACTGTCGACATGGCATTTTTGACACAACAGGTCATACAATGTGCCTACGACATAGCTAAGGCAGCAAAGCAACTTGTCACTACATTCTCTGTTGAATAGACCACCATATTCCTGTTCTTAACCGCATACAGTTCAGAGAAAACTAGATATGAGGGACATTTAGAGTAAAGGACGGATACGAAGGTTTAGTTCTCCTTACCCGTCCGTGAAATGAAGATGGATAGAAAAATGAAGCGCGGCTTGGAGgcctttaaaaatatttttaaatcagaaaacTTCAAAATGTGTAAGGTATCCGTGCGAAGTCTCTCTTGAGGGGGTGCCCTTTCAATGCATTAGCTATTGGTTGATTGTACTCCACGTGAAACAGAGACAGCGGAGGTGTTTTTCACGTATCCTCTTTTCAGAATGATATCACACCTGAGAATTTCTCCAACGTAGCCCTAAACTGTTCGAAAGAGAACTCTCTCGCATTcagttattttataaaatacagAACTAGGAAACTTGTTTGTACTCTGATAAATGTGTGTGTTTTCGCGTGAAAAATCACCACAACCGTGTTTGTTGGCGTCTCGCCAAGAATAAAATGAAGAATCGGTGTCAAAACGAGGTCATGGTTCATCACGCTTAGAATGAAGTCGTCTGACCAAGCTATTCTCATAATTATATGTTCCTAAATTTATAGCTAGTAATTTAAGATGTCATATACATATAGAAATTTAAAGAGATAAAGTTCAAATGTTTAAAATCTTGTTTTATTAGATCTACCTTGTACTTATAATCGCTTTTACTTGTAACGTCAAAGCAATTTTAATAAAAGGCAATTTTTATTTGCTGAG

Protein

Uniprot

Uniprot term	Description
Q9Y2X7	ARF GTPase-activating protein GIT1 OS=Homo sapiens OX=9606 GN=GIT1 PE=1 SV=2
Q68FF6	ARF GTPase-activating protein GIT1 OS=Mus musculus OX=10090 GN=Git1 PE=1 SV=1
Q14161	ARF GTPase-activating protein GIT2 OS=Homo sapiens OX=9606 GN=GIT2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08518	GIT_SHD	Spa2 homology domain (SHD) of GIT	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF12205	GIT1_C	G protein-coupled receptor kinase-interacting protein 1 C term	Domain	Interproscan
PF01412	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF16559	GIT_CC	GIT coiled-coil Rho guanine nucleotide exchange factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164	Domain	Arf GTPase activating protein	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013724	Domain	GIT, Spa2 homology (SHD) domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR038508	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR022018	Domain	ARF GTPase-activating protein GIT1, C-terminal	Interproscan
IPR037278	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR047161	Family	ARF GTPase-activating protein Git-like	Interproscan
IPR032352	Domain	Arf GTPase-activating protein GIT1/2, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46097	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0008277	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0032012	Biological Process	regulation of ARF protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12487	GIT2; G protein-coupled receptor kinase interactor 2	-	Membrane trafficking	ko04131	deepkoala