Gene detail

Detailed information of XP_068679337.1 in Montipora foliosa

Genomic Location: chr11:30672543...30676423
NR annotation: XP_015770635.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068823236.1

TCCGTTTTACTCTCTTCGTTTATCATGGATATCAAAACCTTTCTAGACAATATTCATGAACATGCTTGTTGTCCTGTATGTAAGACGCCAGGTTCACTAATCCAAAGCAGCTTCCTTGCTTACACAGTTTTTGCCTTTGTTGCCTGCAAGGAATTCAACAAACGAGCGGAATTCGAGACACTATTTCATGCCCCGAGTGTAGGCAGAATTTCAGGATCCCTGGAAACGGTGATCTTAATGCTTTTCCAACAAACTTTCGCATCAATAGTTTGTTGGATGCTTTGCCTGTCACGGAGTGCAATACGATCGGCATCAAGTGTGGAAATTGCGAGAAAACAAGCGCGGAATCTGCGTACTGCTTCACTTGTTGTTCGTGCTGGTGTGATGACTGCCTCCCTCTACATAACGGCATAAAAACATTCAAGGAACACCACGCTTTGGCTTTAAAAGACTTTCGAGACGATGACTTTGAGACCATTTTAAAGcagccaacactttgtgggaaacacgagaagagaaaacagaagtttttctgtcaggtgtgCAATATAGCCATTTGCAACGCTTGCGTTCTAACAGATCACGACGGTCACGCTAAGATTGTTTTGGAAGATGCCGCAAAGGAACGCAAATCGAGAGTCAATGCAGcaattgaattaaaaaaacGAAGAGCGCTGGAGAAGATGACAAGGATCACGAAAATCGatgaaaactgcatttcagtTCAAGAACAAGCCGCAGGACTGAAAAGGGATGTGCAGCAGTTTGCCGACATTTGCATTGCCGCCATTGAAGCGCAAAAGAATCACATCTTTGATGAAGTGGAAAACGTAGTGCGAGAAGCGTTGCAGCTTCTAGGAGAGCAAAGGCACGAGATTGAAGAAGAAGTGAAAAAGCAAGAAGTAGATATCGAAAAAACCCAAATGATTTTAAAGCGAGGCACAAACTCTCAAATCATGCAGCCCCATGAATTCTTGGACAAAATAGTTCAGGAAAAAGCTGAAGAAGAAAATTCAGCGGACTGTGTCATCGAACATGTCTTCACCTTTATAAGGAACGAAAAGTTGTTTGATGATCTAAAAGTCCAACAAATAGGTTTTATCAGCATAACGAGCTCGGAAACCTCCAGTGCTGAGGGAAAAGGGATCACTGAAGGAACTGTTGGACTTGAAGGTGAGATTGTTGTAACAACAAGGAACGCACGAAAAGAACAATGTTACCAAGAACACGACCTCGTGACATTGGAAATCAGAAATCGTGAAGGCCGTGACAGTGCGATCAAGTCTCAAATCCAAGACAACAAAGATGGCACTTACAAGCTCCGCTATTTTGCCAAAGAAACCGGTACATATCAGGCATCCGTGAAAGTCAATGGAAAACATGTTCATGGCAGCCCTTTTGAAGTTCAAGTCAAACGCAGACAGTTCAGACCTGTGTTATCCTTTGGACAACAAGGTGCAGATGCTGGAGTGCTTTCCAGTCCTTGGGGGGTAGCTGTGAATGACAAAGATGAGATTGCAGTGAGTGAGACTGGTAACCACAGAGTACATATATTTACTAGTAATGGAACTCACTTAAGATCGTTTGGTAAAAAGGGTAATCAGCAGGGAGAGTTCGACTGGCCTGCTGGGATAGCTTTTCGTGATAATAAGATTATAGTGGCCAACGCTAACAACCACCGAATTCAACTTTTTAGTGATGAGGGTCATTATTTTAATCAGTTTGGAGGAAAAGGAAGCCGGGATCACCAGCTTCAGTTTCCTCTTGGCCTGTCGATTGACAGCGATGGCAACATTATGGTTGCTGATAAACTGaacaaattaatcaaaatctttTCACTTGATGGTCGGTTTCTGCGCAGTATCGGTACTGAAGGTTCTTTCAGCTTTCCCATTCATTGTATCCAACACAACAACTATCTTATTGTGTCGGACAGAAGTGATCACTGTATAAAAGTTTTTAATAGGGAAGGAGAGTTTATTTATAAATTTGGAAATAAGGGAAAGGGGGACGGGGAGTTCGATACTCCTTGCTGCCTGTCAGTGGACAAAGCGGGACATCTGCTGGTTTGTGATTCAGCGAATCACCGAGTGCAGGTGTTTAAACTCAGCGGAGAGTTTGTAACTAAGTTTGGAGCATATGGTACAGGGAAAGGAGAGTTCAAACGCCCACTTTCTACAGCAGTCCTTAGTGATGGTAAAGTAATTGTCACCGAGTCTCAAAACCATCGAGTTCAGATTTTTGAATAGATGTACAATATTTCCTGAGTTTTCTTATTCAGCGTCATCGACTTTAAAATTTCTCTGTCGGTGAAAAATTCCTAATTACAATGAGAATTTCTTAATTTGAATCgttgttaaaaaaagcaatattgtAGTTTACACAATTAAAAGCGGGAGAGTTTCACTCTTAGGTTTTTTGGGGGTTAAAAGGTGATAAGAGGTTTTGAATTTACGCGTGGTTGTCTGAGATCTCTtaattttaaagtgcccctgtgatcaaaaaaaccacttccttttttccttgagattttgaaagcgtgtttgctttacacctgactggcaaaattttgagctttgattcttatccaaaggccgtttactttgagtgtaagttttggatttcacggtccgccattactcacgttcaaaactgaccgattggacctcagagggttggagccagggaaaagtgacgtcagaggctcgctagcttaaaatttcagcgtgtgaacgcagcttattatagatgcaaaacgtgagtttaaaagtctgaaagcccgaaacccccgtgctgcatattaattctgcggcgtacacacgtattgcattcttaaactagtgagcctttgacgtcattttctcctcgatccagctctctcaagaacataatgttagtaatggcggaccattaaataggaaaattacagttaaaataaagaggtgtctttttgaaatcaaggcttaaaacgtgggtcacttagtgttttgataacatagttttgaaatccaaagaaaaatatgaattgattttttggtcacaggggcacttaaaagCACCCCAGCGTGCATAATCAAAATTTGTTCCTTGTTTGCGAATTGCCTTAATCTCCACAATCAAAGATAGGCCAGTTTAAAGAATTTTGGCTGAAAATTGTTTCCattaacaacaaagaacaaattccttttattttaaccAACGGAGAGGAGATGGGTTCTATACTGATTTATCAATGTTATGTGTTTTAAAAAAGGcgtgtttctttaatttaaacACCGGGTACTTAGTTCTTAACCGTTGTAAGATTTTATTCGCATATATTACACTTGTTAGAGGAAGAGATTATAACATTGTTATAAAGCTACGAGAGAATTCGACAACTGGTCCTTATATCCACCGCTTTTTAGATAGAGCTTGATAATTCATCCAAATCATCCGTTTCAAATCTTCTTCGCGTAATACCCGCTTTGAAAGAGGGAACGCATTTCACCACAAGTGCCCGGTGCACTGAACGATACTTTTGGAAAATGGTGGACGAATTTGTTACATTAGTTTATACTGGTTGATTAGTTCAACCAAGGGTTTAATATGATTCGAAATTTCAGTACAAATGAGTTTTTACGCCACAAATTgattttttcagaattttataaATGCCCTTCTGATTGATTCCAGGTTCAAAGTAAATTTTTGAAAGTCATAGTTGTGAAAAAATCATAAAGCTGATACGAAAAGGGTACAGGAAGACCACATTTTTCCTCTCTTAGCATGATAATACCTTGGGAAGAGTAATTTAATTTCTTGTAGGCGATGTGTGTTTTGTAGCAATATTTTTTAAGTCTAGAAATATGTACACTGTAGAGCAATTACGATAGCTCGTT

Protein

Uniprot

Gene family

Uniprot term	Description
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan