Gene detail

Detailed information of XP_068679935.1 in Montipora foliosa

Genomic Location: chr11:39309946...39343579
NR annotation: XP_029203547.2, SMC5-SMC6 complex localization factor protein 1-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137976471

ATGGCGGCCAGCGTGCGCAAAGACAGGAAAAGGTATCGCATTTTACTGTCATCTTTTAGCGCCGAAGAGAAAGAAAAGCTGTCCTTATCGATTCAAGAACTTGGAGGAACATATATTGATACGCCAACCTTTGTGAGAACTTGCTCACATGTAATTTGTGCAAAGCCAAGCCGAGGTGAAAAATTCCTCTGTGGATGTGCATCAGGAAAGTGGATATTAACAAAGGACTTTATAGAGGACAGTGTGAAGGCTGGAAAGTGGCTTGATGAAGATTGTTACGAATGGAGTAAGCAAAGTAATGTGTCAGGAGTCTCAGCTGGTCACTTTTCTGCTCCTGCTCGCTGGAGAAAAATTCTTCACTCACAGAGAGGACCTTTTGAGGGATGGAAAGTCCTTGTAGTGGTTGCGGATGCCAAGAAACGAGCAGCATACAAAAGGTTGCTGGACGTAGGTTGTGCTGTTATTGTGAATGGTAAATCCCCATACCAATCCAGTCTGGCTTCAAAGTTGACCCATGTGTTTGTTGAAACAGCTCTTCACAACGAAATTAAAGCTCTTCAGTTGGCTGGTGTTCAGTGTCTTTCTCCTGATTATATTCCAGAATTTCTACTGCAGGATCCTACCCCTCCACCTGCAGTGTTCCTCATTACATCATACAAATCACCAGTGTGTCTAGCAGCTGTTGGAAGACTCCAGAGGACTGCTGGCCGACTGAAACACACACCTGACTTGGGCAGTGATGCCATGCTGTCCAGAATCGGGAAAGAAAATCACTTATCTACAATTACATCAACTCCTACAAAGACAAAGGCTTCTTCATCTGAGCACTTGTGTGTTTCGGAATCTTTGAATAAGAAGCAAAGACAGGATCATATCAATGACAGGGTAGATTTCACTTGTGTGGACAAATGGAGACCAGTTTCAACTTTGAATGGGTGCAGTTCAAAAGCACACAAGGTGTGTGCTGCCGAGTTCCCAGGATATGTTATGAATTCAATTGATGGTTATTTAGAGGAATCTCATGAGTCTACTGTCCTGCATGTTATAAAGTCTTTTATGACCTCTGTGAGGTACCCACCAGCATCTCTGCTCTGCACAGTCATTGACCAACTGCAGAAATCTCCTCTTGTCCACGCTACCAAAGCATTCCTGTTACTTCAGCGGCTTCTCGTTTTTCATCCACCGTCACATAACTCCTCTCTGTACCAGCCCACACTTAACCTACATGCTAATGCTGAAGGAACTTCAGTAGAAGGGTCTGCTTGTGATTGGGAGTTCCTGAAGACAATCTGCAGCAAAACTGACGGGAACAGCCTGCTCCTACTACGATTTGTTATCACTTTACTTGAGAGGGACTTCCATGGACACTCGGGCTCAGCGGGCGTATTGTCAGCCAGTGAAACTCTTATCAGCCTCAAGATGTCTTTAATATGGCAAATGTTTTGGGGCGAATCTTCAGGAGTGTCTTTTAATACCCGCCTGCGAGGGCTGTTGGGAATCTCTTGGAATGTTGCGTATCGTGCGTGTGATGATCCAAAAGAGATTCCTGTATTGCATTCTTTACAAAGTGTTATAACGATGGTGTCTCAAATTCACGTTTTTACCGACATCCACTCCATGAAGTGCACTAGAGAATCTCTAGGTACCAGGTTGAGTGAGTGCTCGCGGACTTTTGTAACTGAGGTAACCCTTGGCGGAAGGCAACGTAGCGGTGCTTCTCTACAGCGGTTTTTGGAGACGTGTGGTTCAACATGGCTTAAAATGCATGTAACTGACATGCTCTTAGCAAACTACTCTGACTGTTTGGTACCCCTGGAAAGGCGCTGTTTGAAAATCAGGCCCATATCCCTGGAGAAAATTGTTCTTTACTATTTTTTATTGGTTCCAACTACTGCTGCTTCGTCTCCTGCTACAAAAGCCACTCGTCGGGAACGGGGAGTGCCTCTACATGATATTGGGATTGCTAAGGCACACAATGCATCGCGCAACTCGGTTGGTGGAGTAAATCGTCGAAATGCGAGAGGCGAGACACAGCTTCACATTGCTTGCATTAAAAATGACGCTGTGAAAGTAAAGCAGCTTCTGGCGGCAGGAGGAGACGCAAACAGCACCGATTATGCGGGGTGGACGCCCCTGCACGAGGCTTGTAACCATGGTAACCTGGAATCTGTGCGAGAACTGTTAAAGTCGAGGCAACCGGTCTTAGAAATAAATTCTGAAGATGATCCGTGTCGTCTGCTCAATTTGTTATCAGCTCCCAAGTGTGGCACGACTCCTTTGCACGATGCTGCGGGTAACGATCATCTGAAAGTGGTCGAGTTACTTGTTGCTGCCGGAGGCTTACCATTGATGCAGGCCAAAAACGACTGCGGCCAAACTCCGTTTGACATTACCAGTGATGCGAAGGTTAAAGAGTTTCTGCAGTCCATGGAAAGTAAGAGCCGTGTTTTATCATCTTGTGATTCAACCGAAGCCATTTGTCGGAAAGTGCCAAAACACTCCTCTGAAGAATGTGAAGAGTACACGTTGATACTGGCGCAATTAGTCCAATCGTACTTTCGAATGAGCAAGGGAGCAGCTGACAACTGGGTCAACTTTACGGCGCATGTCGATAATTTGGAGGGTCATGTGACCAGAATATCGCGGAACAGACGTTTGTCTGCAGTCACAAGAATAAGGCTAGCTGCTATGAGAATGTTGATAGGTTAA

Transcript

rna-XM_068823834.1

GGGaaaattcaacatggcggccagcGTGCGCAAAGACAGGAAAAGGTATCGCATTTTACTGTCATCTTTTAGCGCCGAAGAGAAAGAAAAGCTGTCCTTATCGATTCAAGAACTTGGAGGAACATATATTGATACGCCAACCTTTGTGAGAACTTGCTCACATGTAATTTGTGCAAAGCCAAGCCGAGGTGAAAAATTCCTCTGTGGATGTGCATCAGGAAAGTGGATATTAACAAAGGACTTTATAGAGGACAGTGTGAAggctggaaagtggcttgatgAAGATTGTTACGAATGGAGTAAGCAAAGTAATGTGTCAGGAGTCTCAGCTGGTCACTTTTCTGCTCCTGCTCGCTGGAGAAAAATTCTTCACTCACAGAGAGGACcttttgagggatggaaagtcCTTGTAGTGGTTGCGGATGCCAAGAAACGAGCAGCATACAAAAGGTTGCTGGACGTAGGTTGTGCTGTTATTGTGAATGGTAAATCCCCATACCAATCCAGTCTGGCTTCAAAGTTGACCCATGTGTTTGTTGAAACAGCTCTTCACAACGAAATTAAAGCTCTTCAGTTGGCTGGTGTTCAGTGTCTTTCTCCTGATTATATTCCAGAATTTCTACTGCAGGATCCTACCCCTCCACCTGCAGTGTTCCTCATTACATCATACAAATCACCAGTGTGTCTAGCAGCTGTTGGAAGACTCCAGAGGACTGCTGGCCGACTGAAACACACACCTGACTTGGGCAGTGATGCCATGCTGTCCAGAATCGGGAAAGAAAATCACTTATCTACAATTACATCAACTCCTACAAAGACAAAGGCTTCTTCATCTGAGCACTTGTGTGTTTCGGAATCTTTGAATAAGAAGCAAAGACAGGATCATATCAATGACAGGGTAGATTTCACTTGTGTGGACAAATGGAGACCAGTTTCAACTTTGAATGGGTGCAGTTCAAAAGCACACAAGGTGTGTGCTGCCGAGTTCCCAGGATATGTTATGAATTCAATTGATGGTTATTTAGAGGAATCTCATGAGTCTACTGTCCTGCATGTTATAAAGTCTTTTATGACCTCTGTGAGGTACCCACCAGCATCTCTGCTCTGCACAGTCATTGACCAACTGCAGaaaTCTCCTCTTGTCCACGCTACCAAAGCATTCCTGTTACTTCAGCGGCTTCTCGTTTTTCATCCACCGTCACATAACTCCTCTCTGTACCAGCCCACACTTAACCTACATGCTAATGCTGAAGGAACTTCAGTAGAAGGGTCTGCTTGTGATTGGGAGTTCCTGAAGACAATCTGCAGCAAAACTGACGGGAACAGCCTGCTCCTACTACGATTTGTTATCACTTTACTTGAGAGGGACTTCCATGGACACTCGGGCTCAGCGGGCGTATTGTCAGCCAGTGAAACTCTTATCAGCCTCAAGATGTCTTTAATATGGCAAATGTTTTGGGGCGAATCTTCAGGAGTGTCTTTTAATACCCGCCTGCGAGGGCTGTTGGGAATCTCTTGGAATGTTGCGTATCGTGCGTGTGATGATCCAAAAGAGattCCTGTATTGCATTCTTTACAAAGTGTTATAACGATGGTGTCTCAAATTCACGTTTTTACCGACATCCACTCCATGAAGTGCACTAGAGAATCTCTAGGTACCAGGTTGAGTGAGTGCTCGCGGACTTTTGTAACTGAGGTAACCCTTGGCGGAAGGCAACGTAGCGGTGCTTCTCTACAGCGGTTTTTGGAGACGTGTGGTTCAACATGGCTTAAAATGCATGTAACTGACATGCTCTTAGCAAACTACTCTGACTGTTTGGTACCCCTGGAAAGGCGCTGTTTGAAAATCAGGCCCATATCCCTGGAGAAAATTGTTCTTTACTATTTTTTATTGGTTCCAACTACTGCTGCTTCGTCTCCTGCTACAAAAGCCACTCGTCGGGAACGGGGAGTGCCTCTACATGATATTGGGATTGCTAAGGCACACAATGCATCGCGCAACTCGGTTGGTGGAGTAAATCGTCGAAATGCGAGAGGCGAGACACAGCTTCACATTGCTTGCATTAAAAATGACGCTGTGAAAGTAAAGCAGCTTCTGGCGGCAGGAGGAGACGCAAACAGCACCGATTATGCGGGGTGGACGCCCCTGCACGAGGCTTGTAACCATGGTAACCTGGAATCTGTGCGAGAACTGTTAAAGTCGAGGCAACCGGTCTTAGAAATAAATTCTGAAGATGATCCGTGTCGTCTGCTCAATTTGTTATCAGCTCCCAAGTGTGGCACGACTCCTTTGCACGATGCTGCGGGTAACGATCATCTGAAAGTGGTCGAGTTACTTGTTGCTGCCGGAGGCTTACCATTGATGCAGGCCAAAAACGACTGCGGCCAAACTCCGTTTGACATTACCAGTGATGCGAAGGTTAAAGAGTTTCTGCAGTCCATGGAAAGTAAGAGCCGTGTTTTATCATCTTGTGATTCAACCGAAGCCATTTGTCGGAAAGTGCCAAAACACTCCTCTGAAGAATGTGAAGAGTACACGTTGATACTGGCGCAATTAGTCCAATCGTACTTTCGAATGAGCAAGGGAGCAGCTGACAACTGGGTCAACTTTACGGCGCATGTCGATAATTTGGAGGGTCATGTGACCAGAATATCGCGGAACAGACGTTTGTCTGCAGTCACAAGAATAAGGCTAGCTGCTATGAGAATGTTGATAGGTTAATGAGACATCGCGCGAGAGGTGGCTGTTGATAATACAAGAAGTATGTAGACACAAAAGATGGTTTTACGATTGATCGTACTAGTTGATCACTAGCCTAAATAATCGAGTCACTTCAAGGCTTCTGTTTTGTAAGGATGGGAAAGGGGTGTTAGTTCTGATAAAGGTAGTTTTTAAGGGAGGCTATTGATTTTGAAACATTGTGTTCTTTATGTGAATAAGGCCTTCAGACACATGAATCGCACTCGTGAATGAACTTTTGTGATAGTCAACACTGTTTCGGTTCGACAGTTAATCGTTTGATCAATTGAACTGATGTTGAGTTTTGAGGTATGGCAGAAGTTTTTAATGGCAAGAAAATGATAATTAAGTAATTAGGCTAAACATTGCATACCACGATATGGAGCATGGGGAAAAAATGGCAAAGCGTCACGAAGTTTCTATACGCCGCGTTGTTCACCTCTGTAGCGTTTTTCTCGCTCGGCTTCTATGTGGTTTCAGGTGGATTCTTTGTCTTCTCTTGGGCATTCAATGTTGTTGCTTATACTGGAGTAaaatcgtttttgtttttcagtttctttaggGCTGTAAAATCCCATGTAAGCTGATAtcgaaaaaacaaataataaataaataaataaaatcagaCCTTATACAACCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZQF0	DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003938 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049936 all species →	Domain	DNA topoisomerase 2-binding protein 1, eighth BRCT domain	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR042479 all species →	Family	SMC5-SMC6 complex localization factor protein 1	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46677 all species →	SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:1990166 all species →	Biological Process	protein localization to site of double-strand break	Interproscan
GO:2000781 all species →	Biological Process	positive regulation of double-strand break repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26126	SLF1; SMC5-SMC6 complex localization factor protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.