Gene detail

Detailed information of XP_068681405.1 in Montipora foliosa

Genomic Location: chr12:36122070...36165223
NR annotation: XP_029197458.2, putative ATP-dependent RNA helicase DHX57 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC137978404

ATGAATCGTGGACGCGGTCGATCCCAAAGGCCTAATCGCGGTGCTGGTCGTTTTAACACTAAAGCGCTTTTCCGCGCTTTAATAGAGCACGATAAAGACGAAGTTGAAGTAAGTAAAGGCGATGAACAATCTGAAGAAAAATACGACGATTTTGCGGCCGAAAATCGACAAACCACGACGGGAAAAAGCAGTACTACGCCAGGGAAAACGAGACGGAGATCAAGCAACAAAGCTTTGATTCAAAGACTTCATATGAGTATTGAGAATCAACAGCTGGTCGAGGGAGTTTTACGACGTTTAAAAATACATGTACACAGGAACAGTCATGATTTTCAAGAAAACCTAGATTTGAGTTCTAGAGAAATGAAACGAAACGAGGCTTACTGGAGAAAGGTCGGAGAGAGAAAACTTGTGGTTGAGGGTGCAGTTCATTTCGAAAATGAAGAGGAGATCATGAACTGTTTCAAAAAGACTCCGTCAGAGTACAGTCTACCTGTGAAAAAGAGTATCATTGCCCCTGACATTGGATTGGTGGATAATGGGGCTAGCAAAAAAGGTGCTTCTATCATGAAGCCGAAGATAAAAAAACTTCAACAACCATCAGAGGAACTGACCATTCAAGAGAAGAATAGGATGCTCAAGCAGCAGTTTGAGAGATTACAGTCTGTTGCAGCTTACAAGTCGATGCTTGAAGAGAGAAAAAAACTTCCTACTTGGAAATCACAACAAAATATCACAGGAACACTCAAAGAAACCCAAGTGGTTGTTATCAGCGGAATGACAGGATGTGGAAAGACAACTCAGATTCCTCAGTTCATTCTTGACAGTTTTATCGAAGAGGGACGTGGAGGGGAGTGTTTTATCATTTGTACACAGCCGAGAAGAATATCGGCCATGTCAGTTGCAGAAAGAGTGTCAGCTGAGAGAATAGACAAGATTGGTGAATCTGTTGGTTATCAAGTCAGACTGGAAAACAAACAGTCTTCCAGAACAAGCCTTTTGTACTGCACTACAGGAATTTTGATGCGTCGGTTGGAGGGTGAATCCAGCTTGCCTGGTGTGAGTCATGTTATTGTGGATGAAGTTCATGAGAGGACAGAGGAAGGTGATTTTCTCATGATGGTTCTGAAAGACCTGTTGACAGTCAGACCAGATCTTCGTGTTGTGCTTATGAGTGCAACTCTAAATGCTCAGCTTTTCTCACAGTACTTTTTTGATGCACCTGTCATTCATATACCAGGTTGGACATTCCCAGTAAAAGAGATCTTTTTGGAGGATGCTTTGGAAATGACAAAATTTCAAGTCGACTTATCTTCTCCCTACGCAAAACCCATGGCATCTTTAAGTGTTCCAAACATAGCAGCTGGCAAGAAGAATAAAAATTCAAGAGAACTTCAACAAATACAGGATGCCATATCCTGCACAGACTTCAGACCTCCTGATAATGAAATGGATGATCAGAATTTATCAGAAGATGAGATGGCTTGGAGATATGCTAATTACAGTAAGAGCACCATTTTGTCTCTTACTACCATGGATCATGCGAAAATCAATTATGATTTGCTTGTTACAATTCTGGAGTGGATTGTGGTAGGCGAACATGAGTATCCCAAAACTGGAGCTATTTTAGTGTTCCTTCCTGGTATGGGAGAAATAATAACCTTGTTGGAAGAACTTCAGAATAATAGAACATTTAGCCCAAAAAGCTCGGACAGGTTCAGGATATTTCCTCTTCACTCCATGCTGACTAGTGAAGAACAGAGTTTGGTTTTTGAGAAGCAAAAAGAAGGCGTGAGGAAGATAGTTCTGTCCACAAACATCGCGGAGACCTCAGTGACAATAGACGATGTTGTGTTTGTCATCGATTGTGGGCGAATGAAGGAAAACAGGTATGATTCCACCAAAAGAATGGAATGCCTGGATGAGGTCTGGGTCTCGCAAGCCAATGCTCGGCAGCGCCGAGGCAGAGCGGGACGAGTCACATCCGGGGTCTGCTTTCATTTGTTTACCAGTTCTCGGTTTGAACACAAAATGGCTGGTCACCAGGTCCCAGAAATCCAACGAGTTCCACTGGAAAAGTTGTGTCTACGTATTAAAGTACTGGGGCTCTTCATTGGTCGAGATGTAAAGAACCTCACTCCACTGGGTCACCATTTGGCTGCATTACCTGTTGACGTAAGAATAGGAAAGCTAATCCTACTTGGGGCCATATTTGGTTGTCTGGATCCCGTTTTAACGATTGGCGCTATATTTAGCTACAGGTCACCGTTTGCACCGCCTTTTGACAAGAGGAAGGAAGCAGACAAGAAAAGGCAAGAAATGGCCGTTGCTAACAGCGATCATTTGACTCTCCTAAATAGCTACAAGGGCTGGCTACAGGAAATGGAACGCGGGATGTCAGAAGGATATCATTACTGTAGAACGAATTTCTTGTCAATGAAAACCCTTCAGATGATAGCAAGTTTAAAGTGTCAGTACGCCGAACTCTTGGCTGATATCGGCTTCATACAAGCCGACCTCACAGCCAGAAAAATGAAGAGACTGGCGCCGAGAACTGGAGACGGAGTCTTGTTGGCCACAGGCGAAAGGATGAATGTAAACTCAAAAAATCAGAAACTAGTGCTTGGTATTGTGTGCGGTGCTCTGTTTCCAAATGTCGTTCAAGTTGTGAAACCAGACACTAAGTACGAGTTGACCGCGACAGGTGTTGTTCCTGTCAGTGTCAAAGCTACTAAACTGAAATTTTGGACCAAGAATGGACGGGTGTTTGTTCACCCCACGTCAGTTAATTTTCAAGTCAACAATTTTGACAGTCCATATCTTGTGTATCTCGAGAACGTCAAGACTTCAAAGGTCTACATACGGGACTGCAGCATGGTATCAACGTACGCTCTGCTTCTGTTCTGTGGAGACAGTTTGTCCCTAAACTTAGAGGAAGGTGTTTTTGTTATTTCCATTGACGATGGATGGATACAATTCTCAGCCTCTTCGCACCAGATTGCTACACTGGTGCAAGACCTGAGAATAGAACTGGACCGATTACTCGAGAGTAAAATTGAGAATCCTGGTTCGGATAATACGAACTACGAGCAAAGTAGTACGATTATTGATGCTATTGTGCAGCTCATATCTACCCAGTAA

Transcript

rna-XM_068825304.1

GAAAGTCGGGGATTCTAGGCGGAGGAAAATTGGGACCAGAGAGATATCAAGGAACGCCTGCATGATATCTACTTTCGTTTCTCCGCTTGGAATATAGGACGCAACCGCTCGCTTTTTTGTGAACCATTTTCAAATGAATCGTGGACGCGGTCGATCCCAAAGGCCTAATCGCGGTGCTGGTCGTTTTAACACTAAAGCGCTTTTCCGCGCTTTAATAGAGCACGATAAAGACGAAGTTGAAGTAAGTAAAGGCGATGAACAATCTGAAGAAAAATACGACGATTTTGCGGCCGAAAATCGACAAACCACGACGGGAAAAAGCAGTACTACGCCAGGGAAAACGAGACGGAGATCAAGCAACAAAGCTTTGATTCAAAGACTTCATATGAGTATTGAGAATCAACAGCTGGTCGAGGGAGTTTTACGACgtttaaaaatacatgtacacaggAACAGTCATGATTTTCAAGAAAACCTAGATTTGAGTTCTAGAGAAATGAAACGAAACGAGGCTTACTGGAGAAAGGTCGGAGAGAGAAAACTTGTGGTTGAGGGTGCAGTTCATTTCGAAAATGAAGAGGAGATCATGAACTGTTTCAAAAAGACTCCGTCAGAGTACAGTCTACCTGTGAAAAAGAGTATCATTGCCCCTGACATTGGATTGGTGGATAATGGGGCTAGCAAAAAAGGTGCTTCTATCATGAAGCCGAAGATAAAAAAACTTCAACAACCATCAGAGGAACTGACCATTCAAGAGAAGAATAGGATGCTCAAGCAGCAGTTTGAGAGATTACAGTCTGTTGCAGCTTACAAGTCGATGCttgaagagagaaaaaaactTCCTACTTGGAAATCACAACAAAATATCACAGGAACACTCAAAGAAACCCAAGTGGTTGTTATCAGCGGAATGACAGGATGTGGAAAGACAACTCAGATTCCTCAGTTCATTCTTGACAGTTTTATCGAAGAGGGACGTGGAGGGGAGTGTTTTATCATTTGTACACAGCCGAGAAGAATATCGGCCATGTCAGTTGCAGAAAGAGTGTCAGCTGAGAGAATAGACAAGATTGGTGAATCTGTTGGTTATCAAGTCAGACTGGAAAACAAACAGTCTTCCAGAACAAGCCTTTTGTACTGCACTACAGGAATTTTGATGCGTCGGTTGGAGGGTGAATCCAGCTTGCCTGGTGTGAGTCATGTTATTGTGGATGAAGTTCATGAGAGGACAGAGGAAGGTGATTTTCTCATGATGGTTCTGAAAGACCTGTTGACAGTCAGACCAGATCTTCGTGTTGTGCTTATGAGTGCAACTCTAAATGCTCAGCTTTTCTCACAGTACTTTTTTGATGCACCTGTCATTCATATACCAGGTTGGACATTCCCAGTAAAAGAGATCTTTTTGGAGGATGCTTTGGAAATGACAAAATTTCAAGTCGACTTATCTTCTCCCTACGCAAAACCCATGGCATCTTTAAGTGTTCCAAACATAGCAGCTGGCAAGAAGAATAAAAATTCAAGAGAACTTCAACAAATACAGGATGCCATATCCTGCACAGACTTCAGACCTCCTGATAATGAAATGGATGATCAGAATTTATCAGAAGATGAGATGGCTTGGAGATATGCTAATTACAGTAAGAGCACCATTTTGTCTCTTACTACCATGGATCATGCGAAAATCAATTATGATTTGCTTGTTACAATTCTGGAGTGGATTGTGGTAGGCGAACATGAGTATCCCAAAACTGGAGCTATTTTAGTGTTCCTTCCTGGTATGGGAGAAATAATAACCTTGTTGGAAGAACTTCAGAATAATAGAACATTTAGCCCAAAAAGCTCGGACAGGTTCAGGATATTTCCTCTTCACTCCATGCTGACTAGTGAAGAACAGAGTTTGGTTTTTGAGAAGCAAAAAGAAGGCGTGAGGAAGATAGTTCTGTCCACAAACATCGCGGAGACCTCAGTGACAATAGACGATGTTGTGTTTGTCATCGATTGTGGGCGAATGAAGGAAAACAGGTATGATTCCACCAAAAGAATGGAATGCCTGGATGAGGTCTGGGTCTCGCAAGCCAATGCTCGGCAGCGCCGAGGCAGAGCGGGACGAGTCACATCCGGGGTCTGCTTTCATTTGTTTACCAGTTCTCGGTTTGAACACAAAATGGCTGGTCACCAGGTCCCAGAAATCCAACGAGTTCCACTGGAAAAGTTGTGTCTACGTATTAAAGTACTGGGGCTCTTCATTGGTCGAGATGTAAAGAACCTCACTCCACTGGGTCACCATTTGGCTGCATTACCTGTTGACGTAAGAATAGGAAAGCTAATCCTACTTGGGGCCATATTTGGTTGTCTGGATCCCGTTTTAACGATTGGCGCTATATTTAGCTACAGGTCACCGTTTGCACCGCCTTTTGACAAGAGGAAGGAAGCAGACaagaaaaggcaagaaatggcCGTTGCTAACAGCGATCATTTGACTCTCCTAAATAGCTACAAGGGCTGGCTACAGGAAATGGAACGCGGGATGTCAGAAGGATATCATTACTGTAGAACGAATTTCTTGTCAATGAAAACCCTTCAGatGATAGCAAGTTTAAAGTGTCAGTACGCCGAACTCTTGGCTGATATCGGCTTCATACAAGCCGACCTCACAGCCAGAAAAATGAAGAGACTGGCGCCGAGAACTGGAGACGGAGTCTTGTTGGCCACAGGCGAAAGGATGAATGTAAACTCAAAAAATCAGAAACTAGTGCTTGGTATTGTGTGCGGTGCTCTGTTTCCAAATGTCGTTCAAGTTGTGAAACCAGACACTAAGTACGAGTTGACCGCGACAGGTGTTGTTCCTGTCAGTGTCAAAGCTACTAAACTGAAATTTTGGACCAAGAATGGACGGGTGTTTGTTCACCCCACGTCAGTTAATTTTCAAGTCAACAATTTTGACAGTCCATATCTTGTGTATCTCGAGAACGTCAAGACTTCAAAGGTCTACATACGGGACTGCAGCATGGTATCAACGTACGCTCTGCTTCTGTTCTGTGGAGACAGTTTGTCCCTAAACTTAGAGGAAGGTGTTTTTGTTATTTCCATTGACGATGGATGGATACAATTCTCAGCCTCTTCGCACCAGATTGCTACACTGGTGCAAGACCTGAGAATAGAACTGGACCGATTACTCGAGAGTAAAATTGAGAATCCTGGTTCGGATAATACGAACTACGAGCAAAGTAGTACGATTATTGATGCTATTGTGCAGCTCATATCTACCCAGTAACGACGAATCATGGCGGCCAGTTTTACACAAGGCGTACAAATACTAGAGAGAGACTGCCTTTATTCGAGCAAAGACTCTCGAGTATTAAGGAGCATGCGCAAAGACGTCAGGGATGGCTAAAAGAAAGTCAccagaaaatatttattttcgttAATGCAATCACTAAAAGATTGCTGTAAATTGTGTACTAACTGTCCAGGAATGGTGTTGTTGGAAACACCATTGGAGGTCTAGGAAGCGAATGTAGAATTCATCCTCGAGTGTTCAATTCCAAAGTGGTGTGCTTCTCGTTAACGTCGTCGTTGCTTTAACTCCCTTTTGTTAAGTATTCCGAAAAGACCCGAGGAATCCCGAAGAGAGATTTGAACTCAGCGGTGATTTGGAATTAGTTAGCATGAAAACATCCTCGGATGCTTTGATTTCTTTGCGCAACCTACCGCTAATGCAAATACCTCTTAGTTCCTCCTATTGCACAAAAATCACATTGTAGtacaacaaaggaaaatttaacaTAATCCGACGAGAAAAACGTCATCTAAAATGTTCTCAAGTACATAGTTTGAAATGAAATCGGTTAATATGAAATCTGAACTTTACAATGATGGTTGATGTTTTAAAATATTCCGTTAAAAAATCGGTTTGCATGAAATTATGTCCCAAGGAAATATATGGAACGTTAATAAGTTGTTCAAATTTAGCCCTCCTTGCTTTCAATGAAGTGTCTGTAATTCTCATCGTTGGAGTTGCGGTCTACACTAAAACGTTACTCACGCTGTTTAAGTTGAGGTTAAATCATCAAGCAGAGGAAGGCaaaactaaaactgaaaaaaatcttCCAGCATGAAATTACGAACTACTATATTGATCGCCAAGAGTTATTTCTAGTTTCTGGCCTCTTCTTAGCGGACATACGTCCTTTTTTGAAAGATCATTAAACGATCATTAAACGAGGTATTGCACTAATATTATTTAAGGAAGCTTACAGCTTTTCAATTTGCTatgaataaaaatgtcttaaaaga

Protein

Uniprot

Uniprot term	Description
Q6P158	Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens OX=9606 GN=DHX57 PE=1 SV=2
Q6P5D3	Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2
F4ILR7	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala