Gene detail

Detailed information of XP_068681673.1 in Montipora foliosa

Genomic Location: chr12:3418883...3448641
NR annotation: XP_029205350.2, uncharacterized protein LOC114969208 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068825572.1

ATTTTTTACCACAACATAAAACGTCACAGCAAACCAAAAGCGACTCATATGATCCATCGAAGCATTCTACATGCCTACGCCAAACTTCTAGAGACGGAATACACATAGAAACAACAGAATTTCAATCGTGGAGAGAAGGAAGAGAGTGCGAGGAGATTCTCCAAAGAACGTTACGCTGGTCACGTCTTCGTTCAAAATATCGGCCGTTGGTCTCCATGAGAAAGCTTCGAAAAACCACAAAGGAACGCAAATAGCAAAAGGCTCGCAAGCTCCAGATGAAGCTTTGTATCAAGCTCTGAAGAGATTTCATTACAAGTGGCGCTGGAGCGAGCATGCCACGAGCTTTTGTTGCTCACTTCGTTGTTGTGGGATGTTTCTTCCTGATAACGAGAATTTATGCGGTCACTTGTCCTAAAGGAGAATTTATAACAAAGTCCGGGAACTGCCAACCGTGCCCAAATGGCACATATTCCGACAGGATAAACAGTACAAGATGTTATCAGTGTGATATTTGTCGTGGAAGACACAACATTCCTACGAAACCTTGCTCATCGACAACGAACAGTATTTGTAGCTGCAAGCCTGGTCACTATTTTCAAGATAGCGTTTTATACTGCTCGAAGTGCCGTACGTGTGGAATTGGACGTGGAGTAAAAAAGAACTGTACTAGAAATAGCAATACCGTTTGTGCTCCTTGCGGAAAGGGGACTTATTCAGATAGCAAAGATTTGAGTCGGTGCAAGCCGTGTACAAAGTGTAAAAAAGGCGACACAGTTAAAGAGGAATGTACGAAAAAACGTAATACCGTATGTCATAGTGGTAAACAAAACAATCTTTCGAAGGGGACACCTTTGGCTACTCCTTTTCCACCACCACCGCAAACAACAGCAACGCCGGTCACGGTGCTATCTACAGCGCGTTCTAAGCCATCGAAACAGGCAAGACCCGCCCAGTCAACCAAACGCAATAATGATGTCTTACCCTTCGAAGTCTCTCTTTCGGTGCTGtcatcatttttgttttgtgttcttGTGGCATTCGGTTGTTTGATGTATCGCTACAGAAAGAGAGGCTCCCATAATTTGGCACATCAAGAAGTTGCTGCGGAGGCCAGCACAGGCAGCACAAATGTTACTCCGGAAAATCATTATACGACTGTCCCAGTAACAGGAGGCCGCAGAGGGCGTCGGGAAACTGGCCCCACAAGCAGGCCAAGATGCAATCACGATTTCTCTCGACTCCCGGGCCAAGATGAAGGTACTCTACCAGAGCGATGCCTCTTTTACCTTTCCAAAGGTTTAGTCATGTCATCCCGTCATGTTTATCAAACTGCTCAGCGCAGATTTCTCACCTTCTGCAAGCAGGATTTGAAGACTGCTCCCAATACCTTTCCACTTCCAGCGGATGAGCAAACGTTGATGCGTTTTTGTACAATGCTGTCTGAGAGGATGAACTATTCTCTAATCAAGACCTACTTATCTGCAGTGCGCGCACTTCATTTGGACAATGGCTTACCTGATCCATTACTCAACTGCGTTCAGTTGCAGAATCTCATCAGGGGCGTCAAACAAGTGAAGAGTTCATCGGGTCCTACAAGGTTCTTAATTACATTTGAAATTATGAGGACAATCCACGAGTCTTTGGATTTGAGCGATCAGGACAATATTATGATTTGGGCAGCGTGCTGCTTGGGTTATTTCGGTTTTTTACGTCTTAGTGAGTTCATGGTTGACTCGGCTTTTAATCCAGGCATTCACCTGTCAGTGAGTGATATTCACCCTGATTCCGACGTTAATCCAACTCACATGAAAGTCAACGTAAAGTGCTTGAGAACAGATCCGTTTCGAAAGCAATGCCACATATATATGGGTCGTATCGATTCACCAATGTGTCCATATGTGGCTATGGATAATTACTTAAAGGCGCGTGGCTTGGCATCAGGGCCGATGTTCCTGTACCGTGATGGCAGTCCATTATCACGGCAAAAGTTATCATGTACACTACAGTCCATTCTGCGCTCAGCTGGCTCACCGCCTTGTAAATACTCAGGATTTAGCTTCCGTAGTGGAGCAGCCACAACTGCGGCTTCGCGTGGTGTTTCTGATGATCTCATTAAGACACTGTGCCGAAGATGCATCGATTCTTACGATGCCTATGACAAAACTTCGATTGACACGGTTTTACGTGTTACCTCTCAGTTAGTTTAGCAGGTTCAAAGAAAATGCTACGAGAGGTTCCCTATACACTCATCAACGAACTAGCTATGTACTTAAACCCACGAGAGAAGTGGAAAATTCTAGGTGGGTGTCTTGAATTCAACAACACAGAGATTAGCAATTTTGGACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052925	Family	Phage Integrase-like Recombinase	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34605	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan