Gene detail

Detailed information of XP_068682000.1 in Montipora foliosa

Genomic Location: chr12:26746748...26767432
NR annotation: CAH3111554.1, unnamed protein product [Porites lobata]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068825899.1

TTTGTCTCTTCCGAAGCACTGTATCTGCTCATGCTTTTATGTTTGCAAATGGGAATATTCAATTTTATCTCGTCATGATTTCTGTTTACATTGACTAAATGGATCACTACAATGCCaaataaaggaaagaaagacAAGCAGAGCTCTAAGTCTggaagcagctctaaacaagggaataaagaaaacggaGAGGTTGCTTCTGAAGAGGTTAAATCTAAATCGCAGCCACTTGCCCATCCACCGAGTCAAGTAGTCAAATTAAGGCAATATGCAAATGGTCCCTCGATCATGAGGAAAGAAAAACGACAGAGCTCTTCGTCGTTCAATGTTAGTGACAATCGCGAGATAATTAAACTACCTCCATTGAAAGATGCCCCACCAAATGAAAGGGAGCAACTATTTATGCAGAAGATACAGCAGTGTTGCATTCTCTTTGATTTTGCTATGGATCCTCTGAGCGACCTAAAATTCAAGGAGGTCAAGAGAGCAGCACTTAATGAGATCGTGGACTTCATCACGCATAACAAGGGCGTCATCACAGATCCCATTTATCTTGAAGTAGCACACATGTTTGCAGTCAACACATTTAGGACTCTTCCTCCCCCATCGAATCCCAATGGTGCCGAGTTTGATCCAGAGGAAGATGAACCTAATTTGGAGGCTGCCTGGCCACATCTTCAGATTGTTTATGAGTTGTTCTTGAGGTTCTTAGAATCACAAGATTTTCAACCATCGGTGGCCAAGAAGTTCGTTGATCAAAAGTTTGTTATGCAGCTTCTTGACCTGTTTGACAGTGAAGATCCGAGGGAAAGAGACTTCCTCAAGACAGTCCTCCACAGAATATATGGCAAATTTCTGGGACTGAGAGCTTATAtcagaaaacaaataaataatatattttacAGATTTATATATGAAACGGAGCACCATAACGGCATTGCAGAGTTGCTAGAAATCTTAGGAAGTATCATCAATGGCTTTGCACTTCCACTAAAGGAAGAACACAAGCACTTTCTGATGAAAGTTTTGATGCCTCTACACAAAGCCAAGGCTCTGAGCATGTATCATCCCCAGTTGGCAtattgcattgttcaattcttGGAAAAAGACCCAGCTCTGACTGAACTGGTCATCCTCTCACTTATGAAATTCTGGCCAAAAGTTCACAGCCCAAAAGAGGTGATGTTCCTAAATGAGCTTGAGGAAATCCTGGATGTTATTGAGCCACTGGAATTCTCTAAAGTGTTAGAACCACTTTTTCGACAGCTGGCAAAATGCATATCAAGCCCACATTTCCAAGTAGCTGAGCGTGCACTGTATTATTGGAATAATGAGTATGTGATGAGTTTAATGAGTGACAATGCTGGAGTCATTGTTCCAATCATGTTCCCTTCATTGTACAGACATTCAAAAAACCATTGGAATAAAACAATTCATGGCCTTATATACAATGCACTGAAGCTCTTTATGGAAATGAATCAAAAGCTGTTTGATGAGTGTTCGCAAAAATATAAACAAGAAAGGCACAGGGAAAAGGAAAAGCTgaaggaaagagaagaagcGTGGATGAAAATTGATGAATTAGCTCGTAAGAACCCTGATTATATCAAGATTGCGTGCGTGGAAAGTGGCACTAAAACAGCTGTTGTATGCATGGAGTTAGGCAGCGGCGTAGAAGGAATGGACGAAGGAGATGTGGATTTTCAAGCAGTGCAAAATGTGGAAATGACTGCAAAGAAACCAGAACACAAGAAATTTGTACGGCGGAAATCAGAATTGCCACATGATTCCCAAACTGTAAATGCTCTGACAGATTACAATGGCCCTGGAGAATACCTCGCCTCTTCTCAAGAGGCTTAAAACATCAATTGCCTTGTTGCagaaattttacaaattttaaacatttttaattGGTTATTAATTTTCTTCATAATTGTTTGTTTTAAGATATCTCTGTCGATAATCAAAGATTACTCTTTGGTGAAAATGTGCAAGTCAGCTTTGCTTTTATTCAGTCTCTTTTTCAGTGGAGTTAGTACGATTTTAGTATGCCAATATTtaagggggggaagggggtggcTGTTAACTACCAAACTGGTGCTGTGGACCCCATCAAATGGTCATTTCTGAAGTccctttaaaggggctaggtcacgcaattttaggcaatttcagcactgatcgaatggtcatagaattaaataaaatatcaaaataacttttcaaaactatagaagaactctaacaaaacatagggaagccaagaagggacatggatggacaaaactggagaggattgaaatggattgaatttgggtaaatttgaaaaacgtcggcccaccttttttcaaatttatatcactctatatcaaaatgtcatttacacagctagaaaatcattctcagttgttatgtggccgtgattttgcaaatgaaagactcatgctctgccaatttgacgtttagagctcataattaacaaaattaaacaaaattacctaaaatagaaTGACCTAGCctctttaactctacagttatccttttttgccaagtgcGTTCtattaaacatttctttgtatgGTTTGACTCAACCATGTTTTGTAAATCatatgaccaaaacagaaattGTCTAAAAACACAGTGAGTTAACTTTGTTTCtcacaaatttttaatgcaactgtgtgagaacattctaacacaaaatttGTGGcatgtatttaaaaaaatatattatttctTAAGTCCCTcatttgatacacttttcaaaatatcagttccattttttgtgcaaatggaaaattattccATGCTAcattttacgaaaaatgatgggacagttcccatccggtgaaaaaaacCTCCTCttccttttaatttgtttccCAAGAGATTTTACATGTCTTTCACTGAAACGCATGGCAGAGGACCGGGACTAGTTGCGCACGTGCCTTGTGATTtaagatttccattgaaaaagttacttctgAGAACCATCCACGCAACCTTTTTGGTGGGCTCTTGACTGAAAAGCTTTCTTAACAACCGTTGTCTTTCTGtcgttaagagccacccccccccctcctccctaaCTGCAAAACCAAGTGTGATAGAAGGTGAAAGCTTTAAGGGGAGGGACGGGAACTTTTGACAACTTGCTCATGTGCCTTGATATGACCATTTTAATATTCACCTTCAGTCAGACTGATAAAGAAAGTATATATGTGGCCATTTTTATTTGTCAATAATTTGTTGTTTGCAGTGacatttctttcactttctCTTCTCTTACGTCCTACACAAATTTTGCATCCAGCGTATGTTTTGCTGTGAAAGATATCCATGAAAAATGGACTAGGGGATGTTTCAttgctatttattttattatttttttcaatggaacaaaagaacaaaattttaaacatttaGAACGAGCCTTTGAAGGGGGCATCTGCAAGGAACCACCTCTGGGAGTAGGTAGAAAGTACCTTTTATCAAAGGGCATACTTTAAGCAGTGATGTTTTGAACACCTTGTAAGTTGTTTAACAAGATTTCTTGCTCTGTTTTATGTTGAAGTGATTAATATATTTTTACAATGAAATTTCAACTACCATTTTTGAAACAGATAAGGACTATATTACAAACTTTTACAtggaaactgattttttttattttgatggGATAATATCTTCAGTTTTGTGACTTAAAATATTAAAGATGTTTTTCAAGAACTTAAAGAAAATTTAGAACAATTTCAGGAATAAAGGTGATTCACGATAAGAACACAAAGAGAAACAATTTGTAAGATAAAGGACAAAGACAAGACCGTTGACGTGAGCTCCCTTTTTGACAAACATTCTTGGAGGGGAATTTATTTGTTCGATACAAACAGAATGCAAACTGTTTTCACTTAAGAGGCATCCTTTCAAATCAACTCATGCAAAGTTATTCGCCAAAGTTTTGGCACAAGAGTGGTGAATAGAGTTAGACGATTTGCTTTGGTGACTGGTTAtgatacatgaaaaaattatgGGTAAGAAACAAGGTTTCtgttagcctgcgagcaggccctctGAGGGACTGGGTTTGGGTATACCCACCGCAGAGAGAGAGCTTGCTTGCAGGCTACTGTGGACTACGAGCAAATTACAGAACTATATACTCTCACCAGTCCACTCAGCTATGGAAAACACAATaagccacttgcactaagaggtcacgtgaccaatgcttcccttaaacagtgagttgtaatcttgctgttgccaaaaattgacagaacacataaaaattatcttacacgcgaaatttgagaggaaacgcatttaagggagatattttatggtactttgatttttcaacaaagtagcatgatttgtcttggccgccatgttggagggcatactcttgccctccaacatagcgtccaaaactactttttgcttatatcttgttaaatgtttgatagttgagttcagatgtgccataaacgttaccacatcatcttttcaacattttccttaaagttcaagtgcaaaatttgtgtcagaaagcggtaattcataattttaaaaaaaaattcaagttttggtcacgtgaccagctacggactttctcattttaagcaaatggtgcgggtttgaaaaaccaaatcactattattttgtttaagagatgacccactaatagtgtttcgaaggcaaaatcatgtaactttcattttcataaaaacgatgtcacatgacctcttagtgcaagtggcctattatgATCATGAAGGGGTATAACGGAATTCACCTTTTTGGACTGGGAAATTGGTGTGTACTTCCCTGGGACTGGGATTCAACCACTGGCAAAAGGGATAAACATTTCGAAAATGGGAATGATGGGATGTCTCTGATGCTATTATTTGACTCAACTTCTCAAATGAGggatttttaaaataaagaaataaagttATCTATCAGTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28653	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus OX=9986 GN=PPP2R5D PE=2 SV=1
Q14738	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens OX=9606 GN=PPP2R5D PE=1 SV=1
Q13362	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Homo sapiens OX=9606 GN=PPP2R5C PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001884 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01603 all species →	B56	Protein phosphatase 2A regulatory B subunit (B56 family)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002554 all species →	Family	Protein phosphatase 2A, regulatory B subunit, B56	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10257 all species →	SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0072542 all species →	Molecular Function	protein phosphatase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11584	PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068682000.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

36.9Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	16.88	36.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	36.89
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	30.59
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	30.04
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	29.51
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	26.63
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	26.23
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	23.90
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	23.83
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	23.74
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	23.13
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	22.94
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	22.84
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	22.61
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	21.96
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	21.90
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	21.88
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	21.29
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	21.29
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	20.14
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	19.01
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	17.91
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	17.75
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	17.33
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	15.45
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	10.22
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	9.95
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	9.00
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	8.11
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	6.65
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.10
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.