Gene detail

Detailed information of XP_068682803.1 in Montipora foliosa

Genomic Location: chr12:19722966...19743941
NR annotation: XP_029189873.2, uncharacterized protein LOC114956812 [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068826702.1

ATTTTAAATACTCACTGTGGAAAACAAAACGCTCAATCGATCCAGAGGACCGTATTTCCTGTAACAGCTAAATGGTAGTGGAGAACACCATGATGGATCGTGAAGCGGTTTCTTTGCTGTCGTTTGTACTTCCTTGCATTTGTGTTGTAGCCATGGCTCACGAAGAAAATATGCCTGCACCATTTGTAAGAGTTCTTTCTCTGAAGGATCCACTAATGGAAGGAAATGATGTTGTGATCCTGCAAAATCTGTTAGTGCGGTCAAAATTTGTAACATCTCTGGAAAGAACAGGCTTTTATGACAAGAAAACCAGTGAGGCTGTGTCAAGTTACCAACTAGGCAATTTTTTAAAGGATACTGGAGTGTTTGATGCTACGACGGCCTCCCTTGTTCTGGATCAGCTGATGAGTGACGGTTATAAAGATAAAGGCACTGTACCTTTTGGATATAAATTTAAGGTCCATATTCCTGTTTATAAAGACCGCACAATAGAAACAACTGGTACCCTCTATGACTCTAATAATGAGGTAAAGTACACATTTGTAGCACGTTGTCATGGCAGCATTAACCGTTTGACTGGCAAAGCAATCAATCAGCTGACAACAAATGGCAATACTCCAACAGGACTAATTACATTTGACCGCAACAGTAAAGAGCCAATTCCAAAGTTATATGGACCatATCCTGTCTTACGGGCAGTCAAGGGACAAGAAGGAAATGCTGCCATTGGGCGAAATAAAAATGACACTTTCCTGAGTGACTACCGAAGTGGTATTCTGCTTCACACTGGAGAATGGGACCACTGGAATGCATCAAAACCTATGCCAAACAGCCTTGGCTGCATTCATGTGCATCCCTCAGCCTTAAAAAAGATCAATGAACTCTTGGATAAAATGGGTGTTGTCATACACAAAAACCCTTTTGGAAAAAAGCCATATCCGTACACTCCTCAAGGCATCCTTTCTGTGGAACAGATTGACTGAATAACGGACAAGGTTATGTAATCTAACTACATGTAAAGGTCTGCATAAAATTACCCGGTAGCAATAGGAAAAAAGTAGGCAATGAGCAATACAAAATCTTTGTTTAGAAATTAGAAATTTGCCTTGTTAGCATAAGCTCTTCACATTTTAATCTATGGCCTCCAATAAATCAGTACTCAATATCAAAACTGTGTCATATATTCAGCCATAATATGTAAGGAGGGGATATCAGATTTATTCAGCTCTGGTTCCGCCCGAGGGCGCAGCCTGAGGACGGAGGTGAATAAATCTGATATATCCGAGTGAAAGGccgataaaatgcttattttacACATTGGTGAGGTTTTCTAGAAAATGCACTGTTGTTTGAGATGTCGGCAAAACAGCTTGATGAAgatttgcaaagaaacaaatatatATGTAGTCTCTCGGGACTTAAATTACACTGTGGATTACCGGCTTGATCAAGTTCAGCTGATGTCGAAGTATGAGTGAATCGGACTCCAGTGATGATAATTTCATTACTCAAAGCAGTTTTTCTGGTACTATTCAGTCGTCTTGCGAAGGTGAAAGTTTGGTACTGGATTGTGAGTCAATGTCAAACAGGCAAAACCAATATCAGGAGACGAAGAGATTCTGTGGTCGAAGGGACTGTTGGGTGAAGATGACCCTCGCACCTTGGTTAACACTTTATTTGGCAAGTACTTTTCGCTTCCAAGTGGCGAAGAACACAGAGAGCTCCGTTTTTCTCAATTGGAAGTTATTGAAGGAGACTTAATCGAAAGAACAAGACTAAAGTACACGTCTTTTGCGGAAAAGAATTATGCTTGAGGATTACAACATCGCAAAGTCAAGGCAAAAGTTGTCGAGCATCATGAGAACATTGTGAATCCAAAGAGATGCGTAATTCGTTTATACAAGAAGTATGCAAGTAAATGCCCAAATGATGTAATTGGAGGTAGTGTATTTTATTTAACTCCGAAACGGAAGTGGAGTGCAGGTGATGAGATTTGGTTACTCGTTCACCAATAGGAAAAAATTCTTTGAGATCTGTAGTTGCTGATATGCGAAAGAAAGCAAATTTCGAAGGGCACTATATTAAAGGGCTACCACGTGTACCTTAGCTTTAGCAAAGGGGGTACCTGGAAAACTTGTTATGGAGCGAACTGGATACAGGAATGTGAAATCGATGCACGAATATCAAAGAGTTAGCTCAAAGGAACGAGAGGCTGTGTCCGATGTTTTGCAACTTTCTAAGAAATCGTGAGCCTCCGCGTAAGAAAATTGCTCTTGGTCGTAGTAGCGTGGCCACTTCATCTAGTTCCACGTTTACGTTTGCTAACTGCAAAGTTGTATTTGACATGAAATGAAACTAAAATTGTATAAAATGAATTCAGATAATGTTATTAAAtcattcaataaaatggaaGTGTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006223 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF03734 all species →	YkuD	L,D-transpeptidase catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038063 all species →	Homologous_superfamily	L,D-transpeptidase catalytic domain-like	Interproscan
IPR036366 all species →	Homologous_superfamily	PGBD superfamily	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan
IPR005490 all species →	Domain	L,D-transpeptidase catalytic domain	Interproscan

PANTHER

No PANTHER signature was detected for XP_068682803.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068682803.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068682803.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

422.5Max TPM

109.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	109.33	422.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	422.50
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	406.27
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	397.16
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	270.25
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	261.55
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	235.79
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	231.27
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	209.80
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	179.82
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	110.69
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	107.76
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	98.69
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	88.47
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	86.84
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	71.10
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	70.96
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	69.51
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	69.14
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	64.95
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	64.46
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	60.44
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	60.44
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	56.46
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	56.26
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	47.09
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	45.52
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	34.26
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	29.94
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	28.67
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.