Gene detail

Detailed information of XP_068683051.1 in Montipora foliosa

Genomic Location: chr1:59632663...59635578
NR annotation: XP_015778331.1, PREDICTED: PHD finger protein 23A-like [Acropora digitifera]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86YI8	PHD finger protein 13 OS=Homo sapiens OX=9606 GN=PHF13 PE=1 SV=2
Q8K2W6	PHD finger protein 13 OS=Mus musculus OX=10090 GN=Phf13 PE=2 SV=2
Q5HZN9	PHD finger protein 23A OS=Xenopus laevis OX=8355 GN=phf23-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14571 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068683051.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068683051.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

185.5Max TPM

87.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	87.84	185.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	185.51
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	177.07
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	149.66
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	140.46
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	133.95
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	127.88
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	118.29
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	116.67
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	113.20
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	112.24
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	110.63
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	109.32
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	107.90
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	105.13
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	104.71
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	104.03
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	103.87
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	101.96
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	99.93
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	99.84
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	98.49
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	96.36
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	82.75
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	82.31
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	72.11
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	70.94
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	67.45
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	61.72
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	61.23
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	46.73
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.