Gene detail

Detailed information of XP_068683067.1 in Montipora foliosa

Genomic Location: chr12:26891533...26895951
NR annotation: XP_015751262.1, PREDICTED: mitochondrial basic amino acids transporter-like [Acropora digitifera]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068826966.1

tggctttgtttctgtttacAAGTCGTGTATAACGTGAATACAAGACGGTGCGAACGAAGAAGGGTCGCTGACCGGTGGAACAGCGACTATGTGTGACGTTCCGAACTATTTGCGATTTAATTACCCTGTCGTATTGAAAGGAGGGCATCGCTAGTTTATCGCTTGGTGCTTACGTTGTTCTGCTTGCACTTTCTCCATGGCACTGGACTTCGTGGCGGGTTATTTTGGAGgatTGTCTGGAATTGTAGTCGGGCATCCTTTCGATACCGTGAAGGTCCGCCTACAGACACAAGCCACGAAGCGATACACTGGAACCGTAAACTGTTTTGCGCAAATAATAAAACAGGAAACGGTATTTGGTTTGTACAAGGGCATGTTGTCACCCATGGCTGGAGTAGGCCTCATAAATGCTATCATTTTTGGTGTCCAAGGTAATGTTCTGCGAATCTTGGAGCCAGGATTGTCAAGTCATTGCATTGCAGGTGGAATTGCAGGAGCAGTTCAGTCTATTGTCTGTTGCCCGCTTGAGTTAGCAAAAACACGTGTGCAAGTTCAACAATCACGGCTGAAGGCTCATGAAAAGTACCATGGATCACTGGATTGCTTGCAGAAGATTTTCCGCCAAGGTGGATTAAGAGGCTGTTACAAGGGCATGACAATAACTGTTATTCGAGAAATCCCCAGCTTTGCTATCTACTTTGGAACATTTGAAGTATTATGTGCTGCAATGACCCCTCATGGCTCTAGCGTTGATTGTGTAGGTCCACTAGGAGTACTTTTTGCTGGAGGCATTAGTGGTATAGCATCCTGGGTTTTTATGTATCCTATAGACGTTATAAAGTCAAGAATTCAGGCTGATGGTGATGGCAAAGATCGAAGATACCACAGTCTGGTGGATTGCATTAAAAAGACATACAGAACAGGAGGTCTACGAGCATTTTCTCAGGGAATGACTGCAACCGTTCTCCGTGCATTTCCAACCAATGCTGCCACATTTGCAACTGTCACAGTAATTCTTAGACTTGCCCGAAACCGTGAAAAACAGCTTGAACTGGCTTAATGTTGACTAGCTTGGTGTTGACTTATTTTGGGTTAAACCGCAAGATGTGCAAAGTACTTTTGAAAGTCTCAAAACCAGACTCGGTATTCAAAAATTAACGTATTGGATTTTGGAAAAATGGCCATACAATGAAATAGGATGTGTTAATGGTTACTTTTAACGACCAACAATTTAAAGTATGGCTGTACATTTGTAGTGCTTTATTTAAGTCTTGATGTTTTTACATCATTTAAAATGTGAGGATCTTTGTTAGTGTATGAAAACGTCACAACCTTTGCGGAGAATATTACTAGAATTTTATAGAAATGCTGGCCTTAGATTCTTTACTTTTGatataaataatttgttttaagtATATAGtgaaacagtggatagcattttTGTGCGCAATTGCTGATGGGCAACTCAAACTTTGCTCtccacctccgagcaactcatgTGGGATTTGTGCCCAACAATATTGTAATTGCtgctttttgtgctatattatctcactgttttagtgtaCACTATTTACACTATATACCTTGCTCCTCCACAGCTCAGTAAATATCCACTACTggccacctccacttcagtgaattgTTGATAATAATGGTTCTGTACTTGTCTGAGCTAAGCATGTTTGACTCGATAAATCATATTTTAGGTCTGACAGGTTATCACTGAAAACATCTTattaaaacaacaacagaagTTCAGCTAAAGTGAAATGTTGCTTTTTTCAGTCCTGAGACtgaagcaaaattattattgaCTTTGGGTTGTTACGTGTACCTCTGCGTGTGTTCATGTTAGTAAGCTGCAAAAATGGTAAAGAATAAAAAGGTTAGTTAACATGTCTTTTAATGTTTTAAATTTGTATATAGTGAACTAGAAATTAAGGCAACTATTTTTTAGTATTGAAGATATGTTACTATTAATTTTAGGGTTTTTGTAATATGGcaattaataattttaaatagtTATGTAATAAAATGTGTCCTTTCAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DK7	Mitochondrial basic amino acids transporter OS=Bos taurus OX=9913 GN=SLC25A29 PE=2 SV=1
Q5HZE0	Mitochondrial basic amino acids transporter OS=Rattus norvegicus OX=10116 GN=Slc25a29 PE=2 SV=1
Q8BL03	Mitochondrial basic amino acids transporter OS=Mus musculus OX=10090 GN=Slc25a29 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005289 all species →	Molecular Function	high-affinity L-arginine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068683067.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068683067.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

56.0Max TPM

17.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	17.39	55.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	55.98
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	55.90
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	52.42
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	45.55
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	30.49
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	30.20
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	29.88
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	29.50
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	27.46
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	27.36
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	19.32
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	18.04
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	17.72
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	16.69
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	15.84
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	15.33
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	15.25
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	14.86
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	14.81
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	14.63
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	13.84
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	13.81
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	13.33
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	12.24
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	9.24
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	6.93
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.04
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	4.31
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	0.00
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.