Gene detail

Detailed information of XP_068683080.1 in Montipora foliosa

Genomic Location: chr12:22038304...22053092
NR annotation: XP_029203107.2, UBX domain-containing protein 1-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068826979.1

GGGCTTTGCTTGGTAGCCTCTCGTTGTGCAAAGCCTGGTCGATCTTGCTTGGCGGTGCATTGACGGGCGATACTCAAGTCATTAACAGACCATAATTGACTAAATCATATAGCACTATGTCgtctgaaataaacacattgCTGGAAATGGGTTTCCCACGGAACAGAGCGGAAAAGGCCTTAGCAGTCACCGGTAACAGAGGTTTAGAGGCTGCTATGGAATGGCTTTTTGCTCACTCTGAAGATCCTGATATAGATGAACCTTACAAAGAACCTGTTGGGCATGTTTTAGGAGAAAGTGGGTCTACAACTCTGGAAGCTGAAGGAAGTGAAAATGTTCCTGTTGAAAATGCTGAGGTCGCATCTGATACTGCCGCTGTCTCAAGTGGATCTCAACAAGCTCTTTCTCTTGTTTGTGATGACTGTGGTAAGAGATTACGGAGTGAGAATGAAGTTCAGCTTCATGCAGCAAGATCAGGTCATTCCAACTTTTCAGAGTCAACAGAAGAAATTAAACCTCTTacggaagaagaaaagaaacatcAGCATGAAAAGTTGCAGCAAAAACTCAAGGAAAGAAGAGAGCAgagacaagaaaatgaaaaaaagGAAGCTCTAGAAAGAGAAAAGTTGCGACGAAAGACGGGACAAGAACTGACAAGTATAAAACAAAAGCGCGAATTACAGGAAGCAAAACAATTAGCTGACGAGAGAAGACGACAAAAAATGGAGGAGAAGTTGGCGAAGCAAAGAGTGAAGGAACAAATCGCAAGAGATAAAGCTGAAAGAGCTGAGAAGTTTGGTAAAGTTGGTGGAGCTCCAACAAGTCCACAAGCGAGTGTTACGACTGCCACGCCAGCTCAACCGACTGTAGAGAAAAAGCAGCACACAACTTGCAAGCTACAGTTTCGTTTAACAAATGGAAGTACCATCACCGGGAACTTTCAACCCACGGACACCCTGGAGGCAGTTCGTACTTACGTAACTGACCATCGTACCGATGGTTCAGCACCATTCAACTTGATGACGACCTTCCCACGAAAAACCTACACGGACGGTGACCTGGGAACGAGCCTGCAGGATGCCGGGCTTGTTCCTTCAGCAGTGTTGATTTTAACCAAGATATGACCTATTGCACCTAGAACAGAATTTACCCGCTCACCTTCTCTGCTCTATTTAGTCCATCTATCCAAGACAACAACCTAATAATAACAACTATAACAAGAGTAAtacagcgagtttcaattgagtgtcgtaaaaccaaaaccaaagtaattactttggccaatcaaaaagaacggaggcaatccagtaaaccaatcaaaactttaagtaattacacgtagccgacacaaagctcgggaaaatgtgattggttgaaaaaatggcgcgagaactttgaaccaatcactgagtgaagtaatgcaaaaccaaagcaatttgctaattactttcgacactcaattgaaaaccgctctaacaacctttaattatataaacaccaatgaaatatcaagtgagctttcgcgcgaagacatgatatcttcacacgtgaaaagatcactgtttctatggttacatataaaaatcgggcctttcgatgcctttcgtgaaatgatttagtatttcataggtgttgatataataaatagaatattacatggccgcgcgaagatgcgaaatttctcttcgggtgttgaaaaataaaaatgctgGTTGACGAACTAAAGAAGCTACTCATTATGATCTGGAAAATGCAGTCAGTGGATTGGCAtcgggaagatatctgtttacaaacattgttttgttattcaaatgtgctaaccacaggaacaaaagaccatttgtttcgacagccaatgtgGCTCTGGTTCGCACATTAAcaacaataggtgacgtcaacgatatcttcgctatacCACTCACTTGGTCGAGGCATTTTGATTATCTTTTTGAACGAAAACTTCCACTTCAActaaaaaaataacttttaaacTACAGGAAACGTGTGTATTCgaaataaattaatttcagaatcgtt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GL77	UBX domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubxn1 PE=2 SV=1
Q499N6	UBX domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Ubxn1 PE=3 SV=2
Q6NXA9	UBX domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubxn1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006947 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR041923 all species →	Domain	UBXN1, UBA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46340 all species →	UBX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031397 all species →	Biological Process	negative regulation of protein ubiquitination	Interproscan
GO:0032435 all species →	Biological Process	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0036435 all species →	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:1903094 all species →	Biological Process	negative regulation of protein K48-linked deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24348	UBXN1_4; UBX domain-containing protein 1/4	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068683080.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

22.3Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	7.15	22.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	22.26
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	17.43
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	12.63
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	11.80
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	10.94
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	10.88
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	10.80
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	9.93
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	9.64
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	9.58
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	9.47
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	9.42
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	9.35
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	9.29
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	9.24
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	9.01
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	9.00
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	8.91
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	8.63
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	8.14
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	7.33
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	7.04
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	6.71
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	5.96
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	5.10
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	4.75
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	4.09
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	0.00
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.