Gene detail

Detailed information of XP_068683777.1 in Montipora foliosa

Genomic Location: chr12:33103392...33119549
NR annotation: XP_029201931.2, matrix metalloproteinase-2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068827676.1

tgtaaGTGCTTTATATTTCACAGCTACACACTTTCAGAAATCATTTGATCTGTTAGCCATTCGTACCGGAGTGACAAGCAGCTGTACTGCTTGACCGTTTGGAAATTATCTCGGTCGagattttgctctttttttaagACTGAGAAGATGAAAGCTCAGCACAGCTCTATTATCTTGTTTGTGACATTTTCTATGTTTTGCTTGTTGTCCAACGACAGTTTCGCTTTACCTCTTGGCACGAGTGAGAATCCGACCCCAGAAGAAATTGCAGACGTCACTATAGGAGATGTGGAGAAATGGATGATAAAGTACAGGTACAAGGAACCTGGAAGTACATTTGATGATATGGCTGATCAGCTACGTACGCTCCAGTACAGAGCAGGCATTAAGGAAACGGGAGTGCTGGATGACGCCACCAAATGGTTGATTATAACTCCTCGATGTGGAGTGCCCACGAACATCACATTGCTTTATGGTGCATCAAggagaaaaaaacgttttacttTACAGGGATCTTATTGGAGGAAAACGAGTTTGACCTACCGATTCATGTCCAGTACATCGGATCTTCCAGAGAACGTTCAAAGAGATGTTATcagaaaaatgataaaaaagtgGGAGGAAGTCAGCCGCTTGACCATACGAGAAGCAGACCAGTCACTGCCTAATGATGACGTCGATATATTAATTTCATTTAGTAGAAGATATCATGGTGATCCATACCCATTTGATGGTGAAGGCGGAACGCTTGCGCATGCGTACTACCCTCACGACAACAGAGGTTTATCGGGTGATGCCCATTTTGACGATGATGAGCAATTCACGACTGGAACAAATGAAGGCATTAACTTGGATTGGGTAGCACTTCACGAGTTTGGACATAGTTTGGGCCTGGAGCATTCCAACGTTCGCGAATCTGTCATGTATCCGTGGTACAAGGGATTTTTCGAGAATATAGATCTTACTAGCGATGATATTCAAGGAATACAGGCGTTGTATgGCATACCAGAAACTTTACCCCCACCAACAACACCCTACGCTACCACCACAGAGGCCCCAACAACGCAGCCGAAAACAACCACAAAAGAAACCACCACAGAGGCCCCAACAACGCAACCAAAAAGAGAGACCTCAACAAGGCAACCGGATACAACAACGAAGCTGACTACAGTGGTCACGACTCTAGAGAGCTTGACCTACCCACCCACTCAGCCGCCGGTTCTTGACGTTTGTCTGGTTGAAAAGTTTGACGCATTTGTGATGGGACTTGACAGGAAGACATACGTGTTTAGCGGACATTATTTCTGGGTGCTAGGGGAAAGACTTGGTGTGGAGAGTGGTCCGACTTTGATTAAATCAAAATGGAGAGAACTCATTTCACCGATAGACAGTGCTTACACCAACTGGCACGGGCGTACAgtttttttcaaaggaaacCAATACTGGATGTACTTCGACGACAGACTTGAAAGAGGTGCCAACGACATATCTGAAATCGGTTTGCCACCAGAACTGAATTATCCGGATGCGGCTTTTATTTGGGAAGGAAATAGGCGGACATATTTCTTCAAAGGGCAGAAGTATTGGCGATACAATGAGGATTACGGCTCAGTAGACGCAGGCTACCCAAGGGACATTTCAGTCTGGGATCTACGATTCTCCATAGACTCTGCTATGTCTTGGTATGGAAACAAAAGGACTTATTTCTTCAAAAATAAAGATTACTGGAAGTTGGATGACGGCCCGCTTAAACTTGCTACTGGATATCCTCGCAGCATCACACCCATATGGATGAAATGTACCTCCGCATGAAAGTATGACTAACCGGTGGACAGTGCTTACCTTGCGTATGACTCAGTACTCTATAACGATGGATCCTAAGCTATCAGAGAGAAGGGAATCAATTGCGAAAACTGactgaaacaaatgaaacagtTTGCATGTTAAATTGCCACCAGTGACCGAAAGGGCTTCTTTctgttattttttaatttggagTACGCTTCTGCACTTAAGTACCCATTATTCAGATCCTCCACAATTGAACAATAAATGAACCAGACTGCCCTACCCACTCCTCCCCTCCCCCTAATCGTGGGAGTAATAGACAGCAGCCTTCCCCATAAATTATCCTTAGCCCTTTAGCCAGAAGCACATGACTTTGAAACGTGTAACTCGCAAATCTTTTCCTTGAAACAAAGCTGGGATTTTAGAACACAAATTTTATGCCTAAATATTACGTTCAAATTGGGAAATATTTAAACTagaaaaccccagctctgaaccagagttaaacgttTCAAGGTTATGAGCTTCTGTTTCAAATTAAAACACCCTCTCTAAAGAGGTTTTCCACAGAGTGGATTTCGAGGCAAGTATGCCCTATTCGGTAGAGTAAATCGAAGCAAATAGTGTCCAAATAACTAAACTGAGAGGATATTTGCAGGTTCCCTTTTGTCTTTTAAGTGGCTGTTTGACTGTTAAGTCCAAGGACTAAACCTGGATAAACCTGCTTAAACATAGTTCCGTCGTAAATCTCGGCTCTAATCTGAGGAGTATTCACAGAACTGAAGGCAAAATGCCCCCACATTAACAAGGGTGGATAGGTTCCTCATTCTGCAATTTGTTCGCTGAAAA

Protein

Uniprot

Uniprot term	Description
Q9NPA2	Matrix metalloproteinase-25 OS=Homo sapiens OX=9606 GN=MMP25 PE=1 SV=1
P51512	Matrix metalloproteinase-16 OS=Homo sapiens OX=9606 GN=MMP16 PE=1 SV=2
Q9WTR0	Matrix metalloproteinase-16 OS=Mus musculus OX=10090 GN=Mmp16 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021190	Family	Peptidase M10A	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR000585	Domain	Hemopexin-like domain	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08003	MMP25; matrix metalloproteinase-25 (membrane-inserted)	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala