Gene detail

Detailed information of XP_068684167.1 in Montipora foliosa

Genomic Location: chr1:10825517...10880204
NR annotation: XP_044175641.1, Golgi apparatus protein 1-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137980583

ATGCCGAAAACCAAGATGGCGACGTTTCGAAGGGTCGTATCTTTGGGAATAATTGTCTTACTCGTAAACTGCTTAGTCCATTCTTTAGATCTTCCACGTGAAAAAGAAGAAGAAGGAAAAAACGAAGACAATACGAGAAAGAAAGTTATGAAACAGCCAGAAGACAGACAAGAAGAGCAAAAGAGTGAGAGTGATCGTCAAGTCGATAAAGAAGAACATCCACCAGAAACCCGGGAAAATCTGGTGAAAGAAAGACACGATAACGGAAGGACAATGGAAGATGATCATGAACAAGCAAGAGCTGATAAGCCTTCTGTTGCAAAAGAGGAGGAGAAAAAGGAAAACAATCCCAAACTGAGATTTATGGGAGGACAAAGACTGAACCAGTCCAAATGCACAGAAGACATAGCACGCTTGTGCCCTGAAATCCCCAAAGGAAACAATTTTGCTCTTCTTGTCTGTTTGCAGGAGAAAGCTAAGGAAGATGACTTGACTGAGGAGTGCCACCATATGTTGTGGGAATACAAAAGGACGTTTTCAAAAGATGCAAAGTTTGAAAAATCAGTTGAAGAAAGGTTTTGTGTTGCTGATTTAAAACTATTACCCGAGTGTAAACAGCAGGGGAAGATTATTCCCTGTCTTTTAGAGCATCGGCAGAATTTAACCACGCCCTCCTGTAAACACATGATGACCAAAATGCAAGCCATATTTTTCAGCGATTACCGCTTAATTGAAAGGTTCTTGGAGGATTGTTCTGCAGATATAAACCAGCGCAAATGTGGTCGAATACAAACGGAGGAAATTGACGAGGAAATCCATTCTCAAAATGATGTGCTTGAATGTCTTGAGGAACATCAAGAAGACCTTGCACCAGATTGCCAGAAGCAGATATTCCGACTTGCAGAGTTGTCGTCTGATGACTTCCACCTCGATAGACCATTATACTATGCTTGTATAGATGACAGAGAAAGGTTTTGTGAAAAGATACCATCTGGTGAGGGTAGAGTGTACAAATGTTTGAAAAAACACAAGAAGGAAGAGACAATGAGTGATGAGTGTCGAGAAAAGTTGAGAGAGAGGCAAAAAGTGGAAGCCAAAGACCCAAAGGCCAACTATCCATTAATGAAGAACTGCTTCAAGTTTTATCAACAATACAAAGAAGAATATCAATGTGAAAAGGGGAAGACAAAACATGGAACCCTAGCTAATATTCTTATTTGCCTGGAGAGAGCAGTGCAAGAGGATAGAAAAGTGAGTCCTAAATGCCAGGCTGAGTTATTTGATCTCCGGCAACAGTTAATGGAAGATTATTCCATCAATCCAGAGGTTGTTGCGAAATGTGAAGTCGAGCTTGACAAACACTGCAAAGTTGGCAAGGATGGTGGAGGACAGACAATTGACTGTTTGATGGATCTTGCTGAAGAGCATGAAGGCAAAGACAACACAATAAGTGAAGGCTGTTTCAAAGCTATTGAAGGTCTACTAGAAGAGGCAGGTGCAGGAAGAGATTACCGTATTGACAGCACACTATATGAAGCATGTGAACCTATCGTCCAAACTGTGTGTAAAGATAAAGGCAAAAAGGAGGGAGATGTCATGGTGTTATCTTGCCTGATGGAGAACCTTCATACAGATAACATGACACCTGAGTGTGAAGAACAGCTGTTGCACTTGGAATTTTTCATTGCAAGAGACTTCAGACTTGATGCCGAACTACAGAAAGTATGTAAAGATGACGCAAAGTCTTTTTGCCATGCTCCATCATTGGATGACGAAGAGTCCTATCCAACCAGCTTGGTGATTTCATGCCTTTACAGAAATTCAATCCTGGGGACATCAGAAGCACAGGTTTCACCAAAATGTGCTGCTCATGTAAAACGTGTTATGCATCAGAGGGCTGTCGATGTACACTTGATGCCTGAAATTCAGATGGCTTGTGTGCAAGACCTTGGAAAACACTGCAGTGACAAACTTGATAAAGGAGAGGAAATACAGTGTTTACAAGATAAATTTGATGACCTTGGTCAGAAGTGTCAAAATGCTATCGGCAATTTTACAGAAGAGGAAGGAGAGGATTACGAACTTGACAGCACACTGGTGCGTGCTTGTCGAGGCATGGTGTCAAAGTTCTGTGGAGATGTCATTGCTCAGGGAAATGCAGAAGGAGTCCTGCCTTGTTTAGTTGAACACAAAAATGACCAAGGAATGGACGAAAGGTGCCATGCAGCCATTGAACATTGGCAACTTATTGAAATGAAAGACTTCAGGTTCTCTCCTGAATTTAAGAGGGCTTGCCGAAGGGATGCTCAAGAATACTGTAGTGATATGAAAGACAAATTTGGGCTTGTTGAGTGCTTGAGTAAAAGAGTTCGTGATGCTGTGATTAATGGCGAGGAACATACCATTTCCGATCAGTGCCGCGTTCATCTGAGAGTTGAAAAGGAAGAGGAGTCTGAGGATTTACGGCTTGATCCTATAACATTCGCGGCATGTATGAACGACATAGAGGGTCTCTGTAAAGGCGTCCAATATGGTCGAGCAAAGGTTTTGGAATGTCTTAAAGATAACAGGAAAAAGCTGTCGGAAGAGTGCAGGAAAAAGATTTTGGAGCGTGAGGAGGAGGAAATGAAAGATCCTGAGGTGGACTACAAACTTGAAAGATCTTGTCGCAAGATGATATCGTTATTCTGCGAGCATGCGAACCCCTCGGAGATATTTGATTGCCTCAAAAAGAACAAAAATCAACCAGAGATGGAACGCAGCTGTAAAGATATGATCATCAAACGGCAAATAAGGCAGGCTCAAGACGTGGTACTGAATCCACTGTTGCTGCGCTTTTGCGAGTTAGACCTCCCAAAATTCTGCGGCAAAGATTCATCCACTGGAGGAGGCAAGATTATTGCATGTCTCAAGAAACACTATGACAACCTTTCTGATGAATGCCGGGGGTATACCGCACAGCTCATGCGAGAAGCAGGACGTGACTACAGAATGGATGCTAGGCTTGTTGCGGAGTGTAAAGATGAGGTCAAGAGGCTCTGTACAGGAAAGGAATCATCTCCGTCTCAAGTGACTGATTGCCTCAAAAAGAATATAGGATCAATTCAGTCAAAACCCTGTCGAGTGGAGGTGTTTCGCCTTGTGAAGGAAGGTCGCTCAGATTTGAAGTCTGACCCGGTGTTGTATAGTGCTTGCTCATTGGAGGTCAAACGATTCTGTTCAGACATCCCATTTGGCAGAGGAAAAGTTATAAAATGTCTCGTGGAGGCTTTTGATACGAACCGTGCTCGCTTTGACAAAGAGTGCCAGATTCAGTTGTCGTCCCGGCGAGCCATGTGGGGTCAGGCTGTCAAGGCCGTGCCTGGGGAGTCGCTGGGTGATCTTGCCGCCTTCGTTATCGCCTCCCCCTCCAAGAACTACTTCTTCATTGTTTTTGCGACTTGTTTGGCGCTGATCTTCGTCGGTGGGTTGGTATTTGGACGTTTATCTAAGCGAATCAAGAAGGAAGTCAAGGATCGCTGA

Transcript

rna-XM_068828066.1

GAAGGCGGCCAATGCCGAAAACCAAGATGGCGACGTTTCGAAGGGTCGTATCTTTGGGAATAATTGTCTTACTCGTAAACTGCTTAGTCCATTCTTTAGATCTTCCAcgtgaaaaagaagaagaaggaaaaaacgAAGACAATACGAGAAAGAAAGTTATGAAACAGCCAGAAGACAGACAAGAAGAGCAAAAGAGTGAGAGTGATCGTCAAGTCGATAAAGAAGAACATCCACCAGAAACCCGGGAAAATCTGGTGAAAGAAAGACACGATAACGGAAGGACAATGGAAGATGATCATGAACAAGCAAGAGCTGATAAGCCTTCTGTTGCAAAAGAggaggagaaaaaggaaaacaatccCAAACTGAGATTTATGGGAGGACAAAGACTGAACCAGTCCAAATGCACAGAAGACATAGCACGCTTGTGCCCTGAAATCCCCAAAGGAAACAATTTTGCTCTTCTTGTCTGTTTGCAGGAGAAAGCTAAGGAAGATGACTTGACTGAGGAGTGCCACCATaTGTTGTGGGAATACAAAAGGACGTTTTCAAAAGatgcaaagtttgaaaaatcagTTGAAGAAAGGTTTTGTGTTGCTGATTTAAAACTAttACCCGAGTGTAAACAGCAGGGGAAGATTATTCCCTGTCTTTTAGAGCATCGGCAGAATTTAACCACGCCCTCCTGTAAACACATGATGACCAAAATGCAAGCCATATTTTTCAGCGATTACCGCTTAATTGAAAGGTTCTTGGAGGATTGTTCTGCAGATATAAACCAGCGCAAATGTGGTCGAATACAAACGGAGGAAATTGACGAGgaAATCCATTCTCAAAATGATGTGCTTGAATGTCTTGAGGAACATCAAGAAGACCTTGCACCAGATTGCCAGAAGCAGATATTCCGACTTGCAGAGTTGTCGTCTGATGACTTCCACCTCGATAGACCATTATACTATGCTTGTATAGATGACAGAGAAAGGTTTTGTGAAAAGATACCATCTGGTGAGGGTAGAGTGTACAAATGTTTGAAAAAACACAAGAAGGAAGAGACAATGAGTGATGagTGTCGAGAAAAGTTGAGAGAGAGGCAAAAAGTGGAAGCCAAAGACCCAAAGGCCAACTATCCATTAATGAAGAACTGCTTCAAGTTTTATCAACAATACAAAGAAGAATATCAATGTGAAAAGGGGAAGACAAAACATGGAACCCTAGCTAATATTCTTATTTGCCTGGAGAGAGCAGTGCAAGAGGATAGAAAAGTGAGTCCTAAATGCCAGGCTGAGTTATTTGATCTCCGGCAACAGTTAATGGAAGATTATTCCATCAATCCAGAGGTTGTTGCGAAATGTGAAGTCGAGCTTGACAAACACTGCAAAGTTGGCAAGGATGGTGGAGGACAGACAATTGACTGTTTGATGGATCTTGCTGAAGAGCATGAAGGCAAAGACAACACAATAAGTGAAGGCTGTTTCAAAGCTATTGAAGGTCTACTAGAAGAGGCAGGTGCAGGAAGAGATTACCGTATTGACAGCACACTATATGAAGCATGTGAACCTATCGTCCAAACTGTGTGTAAAGATAAAGGCAAAAAGGAGGGAGATGTCATGGTGTTATCTTGCCTGATGGAGAACCTTCATACAGATAACATGACACCTGAGTGTGAAGAACAGCTGTTGCACTTGGAATTTTTCATTGCAAGAGACTTCAGACTTGATGCCGAACTACAGAAAGTATGTAAAGATGACGCAAAGTCTTTTTGCCATGCTCCATCATTGGATGACGAAGAGTCCTATCCAACCAGCTTGGTGATTTCATGCCTTTACAGAAATTCAATCCTGGGGACATCAGAAGCACAGGTTTCACCAAAATGTGCTGCTCATGTAAAACGTGTTATGCATCAGAGGGCTGTCGATGTACACTTGATGCCTGAAATTCAGATGGCTTGTGTGCAAGACCTTGGAAAACACTGCAGTGACAAACTTGATAAAGGAGAGGAAATACAGTGTTTACAAGATAAATTTGATGACCTTGGTCAGAAGTGTCAAAATGCTATCGGCAATTTTACAGAAGAGGAAGGAGAGGATTACGAACTTGACAGCACACTGGTGCGTGCTTGTCGAGGCATGGTGTCAAAGTTCTGTGGAGATGTCATTGCTCAGGGAAATGCAGAAGGAGTCCTGCCTTGTTTAGTTGAACACAAAAATGACCAAGGAATGGACGAAAGGTGCCATGCAGCCATTGAACATTGGCAACTTattgaaatgaaagactTCAGGTTCTCTCCTGAATTTAAGAGGGCTTGCCGAAGGGATGCTCAAGAATACTGTAGTGATATGAAAGACAAATTTGGGCTTGTTGAGTGCTTGAGTAAAAGAGTTCGTGATGCTGTGATTAATGGCGAGGAACATACCATTTCCGATCAGTGCCGCGTTCATCTGAGAGTTGAAAAGGAAGAGGAGtcTGAGGATTTACGGCTTGATCCTATAACATTCGCGGCATGTATGAACGACATAGAGGGTCTCTGTAAAGGCGTCCAATATGGTCGAGCAAAGGTTTTGGAATGTCTTAAAGATAACAGGAAAAAGCTGTCGGAAGAGTGCAGGAAAAAGATTTTGGAGCGTGAGGAGGAGGAAATGAAAGATCCTGAGGTGGACTACAAACTTGAAAGATCTTGTCGCAAGATGATATCGTTATTCTGCGAGCATGCGAACCCCTCGGAGATATTTGATTGcctcaaaaagaacaaaaatcaaCCAGAGATGGAACGCAGCTGTAAAGATATGATCATCAAACGGCAAATAAGGCAGGCTCAAGACGTGGTACTGAATCCACTGTTGCTGCGCTTTTGCGAGTTAGACCTCCCAAAATTCTGCGGCAAAGATTCATCCACTGGAGGAGGCAAGATTATTGCATGTCTCAAGAAACACTATGACAACCTTTCTGATGAATGCCGGGGGTATACCGCACAGCTCATGCGAGAAGCAGGACGTGACTACAGAATGGATGCTAGGCTTGTTGCGGAGTGTAAAGATGAGGTCAAGAGGCTCTGTACAGGAAAGGAATCATCTCCGTCTCAAGTGACTGATTGCCTCAAAAAGAATATAGGATCAATTCAGTCAAAACCCTGTCGAGTGGAGGTGTTTCGCCTTGTGAAGGAAGGTCGCTCAGATTTGAAGTCTGACCCGGTGTTGTATAGTGCTTGCTCATTGGAGGTCAAACGATTCTGTTCAGACATCCCATTTGGCAGAGGAAAAGTTATAAAATGTCTCGTGGAGGCTTTTGATACGAACCGTGCTCGCTTTGACAAAGAGTGCCAGATTCAGTTGTCGTCCCGGCGAGCCATGTGGGGTCAGGCTGTCAAGGCCGTGCCTGGGGAGTCGCTGGGTGATCTTGCCGCCTTCGTTATCGCCTCCCCCTCCAAGAACTACTTCTTCATTGTTTTTGCGACTTGTTTGGCGCTGATCTTCGTCGGTGGGTTGGTATTTGGACGTTTATCTAAGCGAATCAAGAAGGAAGTCAAGGATCGCTGAAAATCTCTTCTCCATACCACACCCCTTTCGATAGCCCTTGTATATGTTCGTTCTCAGTGTACATTGTGTCTTCACAGCAAGTATTGTTTTTGCTGCGGCTCGCCGCTCAGAAAATTAGAGGAGATATTTTGGTAACGTAAGGAAAACATTGAATACGTATACGTTTTATCCCATGCCATATCACGGTCATGTAAGGGGATTAAACTTCAATGGATGACATTTGTTAGTCCCGCGTCGATGTGAAGACGAACGCACCTTTTTGCAGGAATGTAGCCTTCCATACAGTAAGTGGTACAACCCTGTCAAAAATTGTATTAGGTTCGGCATGAGATAAAAACTGGCTGGGTGATAACTGCAAAGGTAACTCGCAAAGTGgtatttctttttaaataagATGAGGTGACAAAGAATATTGCTCTCGCTGTCTTGAACTTGATTGCCAGCAGCTTTTTAAAGAATTCGTAGGATACGCGTTATACATTATTGGAGAAGGGTGGCAATGTTGAGAATTATTATGTTTTATTGTTGGAAACGAAATGTAGGTTTCACGCGATGATACTTTGGAAGATTCATTTCTCTAAGACAGCATACAATAAAACAACTATTAAATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1E9	Golgi apparatus protein 1 OS=Cricetulus griseus OX=10029 GN=GLG1 PE=1 SV=1
Q61543	Golgi apparatus protein 1 OS=Mus musculus OX=10090 GN=Glg1 PE=1 SV=1
Q92896	Golgi apparatus protein 1 OS=Homo sapiens OX=9606 GN=GLG1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00839 all species →	Cys_rich_FGFR	Cysteine rich repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017873 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat, eukaryote	Interproscan
IPR039728 all species →	Family	Golgi apparatus protein 1	Interproscan
IPR001893 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11884 all species →	SELECTIN LIGAND RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06816	GLG1, ESL1; golgi apparatus protein 1	-	Cell adhesion molecules	ko04514	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068684167.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

101.1Max TPM

49.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	49.79	101.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	101.12
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	90.66
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	88.64
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	87.03
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	84.65
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	84.17
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	83.29
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	81.29
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	81.24
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	78.77
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	73.24
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	65.80
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	65.22
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	63.28
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	60.81
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	60.78
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	60.75
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	60.24
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	52.76
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	51.82
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	48.88
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	46.19
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	44.12
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	41.55
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	41.11
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	39.42
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	38.10
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	7.07
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	5.87
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	4.73
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.