Gene detail

Detailed information of XP_068686167.1 in Montipora foliosa

Genomic Location: chr13:30822510...30826374
NR annotation: XP_015747206.1, PREDICTED: methylosome subunit pICln-like [Acropora digitifera]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28678	Methylosome subunit pICln OS=Oryctolagus cuniculus OX=9986 GN=CLNS1A PE=2 SV=2
Q61189	Methylosome subunit pICln OS=Mus musculus OX=10090 GN=Clns1a PE=1 SV=1
P35521	Methylosome subunit pICln OS=Canis lupus familiaris OX=9615 GN=CLNS1A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007727 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03517 all species →	Voldacs	Regulator of volume decrease after cellular swelling	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039924 all species →	Family	Protein ICln/Lot5/Saf5	Interproscan
IPR003521 all species →	Family	ICln	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21399 all species →	CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034715 all species →	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0006884 all species →	Biological Process	cell volume homeostasis	Interproscan
GO:0034709 all species →	Cellular Component	methylosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05019	CLNS1A; chloride channel, nucleotide-sensitive, 1A	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068686167.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

117.1Max TPM

44.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	44.05	117.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	117.07
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	78.39
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	74.97
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	72.23
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	64.33
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	58.91
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	58.59
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	57.59
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	57.28
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	55.60
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	55.25
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	53.14
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	53.08
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	53.05
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	52.95
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	50.19
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	49.42
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	49.41
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	48.56
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	48.30
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	47.94
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	46.11
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	40.41
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	39.80
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	38.41
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	37.61
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	36.04
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	35.43
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	31.61
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	24.19
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.