Gene detail

Detailed information of XP_068687095.1 in Montipora foliosa

Genomic Location: chr13:14315255...14356152
NR annotation: CAH3186145.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC137983814

ATGCCTGTGACACTTTTCACACTTTACTTGATAGCTTGTATGGTGGCGAGTAACACTACTGGTCAGCAATGCAAGCCTTCTGAAGTCTCAATACCTGGCAAAGCTCTCAATGGCCACACATTTAAAACCACCGTAGTCAGCGGACCTATTCAATGTCAAATGGTCTGTGAGAATGATCCAAAATGCAGGAGTTACAACTTCCACATTCTAACAAAAAACTGTGAAATAAATGACGAGACCAAGGAAACGAAACCTCACGATTTCGTCACAGACGATCAAAGGTTCTACATGAAACGCGAAGATATTGATGAATGCAAAGTGTTTCCCTTCACCTGTGACGTCAATGCCGATTGTCAGAATACAGACAGCTCTTACATCTGTACATGTAAGGCTGGATACACTGGGGACGGAAAAACGTGTACAGAGATCGATGAGTGTTTAACGGGAAAACATAACTGCAGCCATGTGGCCATGTGCAACAACACTATTGGTTCATATAACTGCACTTGTAAGGAGGGATATGTTGGAGATGGACGAAACTGTTCAGATATCGATGAGTGTTCAACAGAAGAACTCAACTGCAGCCATGTGGCCGTGTGCAAAAACACCATTGGCTCATATAACTGCACATGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGCTCAACAGGAAAGTATAACTGCAGCCAGGTTGCCGTGTGCAACAACACAAATGGTTCATATAACTGCACTTGTGAGAAGGGCTATGTTGGAGACGGACGAAACTGTTCAGATATCGATGAGTGTTCAACAGGAGAACACAACTGCAGCCATGTGGCCGTGTGCAACAACACCTTTGGTTCATATAACTGCACTTGTAAGGAAGGATATGTTGGAGACGGACGAAAATGCTCAGATATTGATGAATGCAAAGTGTTTCCCTTCACCTGTGACGTCAATGCCGATTGTCAGAATACAGACAGCTCTTACATCTGTACATGTAAGGCTGGATACACTGGGGACGGAAAAACGTGTACAGAGATCGATGAGTGTTTAACGGGAAAACATAACTGCAGCCATGTGGCCATGTGCAACAACACTATTGGTTCATATAACTGCACTTGTAAGGAGGGATATGTTGGAGATGGACGAAACTGTTCAGATATCGATGAGTGTTCAACAGAAGAACACAACTGCAGCAATGTGGCCGTGTGCAAAAACACCATTGGCTCATATAACTGCACATGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGCTCAACAGAAAAGTATAACTGCAGCCAGGTCGCCGTGTGCAACAACACAAATGGTTCATATAACTGCACTTGTAAGAAAGGATATGTTGGAGACGGACAAAACTGCTCAGATATCGATGAGTGTTCAACTGGAGAACACAACTGCAGCCATGTGGCAGTGTGCAACAACATCATTGGCTCATATAACTGCACTTGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGTTCAACTGGAGAACACAACTGCAGCCATGTGGCAGTGTGCAACAACATCATTGGCTCATATAACTGCACTTGTCAAGAAGGATATGTTGGAGACGGACGAAAATGTTCAGGTTGTCCCAAAGACTGGGAGGCAAACGGCAAACATTGCTATAAACTGCATGCGAATAACTCCTATCGACTCGATAAACTAAACGATGCTCGACAAAAATGCAACGAAATGTCAGCATACCTGCCAATAATTGAATCGGAGCAGGAAAATGTCTTTATTGCTAACCTGATGATGATGAGCACCCCGCGGACAAGTTATATTAGGCTTGGTATGAAGCGAGAGAAAGGCAATTTGCTTTGGTTTGACGATGTATCAGCAGAGAGGGGGAATAACAACCGTTATAACGCATGGGCCAACGGTGAACCGAATCCGGGCAAGAATTGTGCTCACATGGAACTTGACTCCTCTGATCGTCCAAAGTGGAAAGGCAGCCATTGTGATTACCATTATCCCTTTTTTACAGCTCCTTTTCTCCTTTGTCAAAAATCGCGTTGA

Transcript

rna-XM_068830994.1

TTGAAACCCACCCACGACAAAGGAATTGCAGGTGGCTTTTTACTTGCTGGCGTTCTTTTCCCGAGTTAGTGTCAAAATCTCCTTTCCACAATTTGAATTGAAATTTACGCTGTGCAGCTTGTGGTCGGAAACCAAATGCCTGTGACACTTTTCACACTTTACTTGATAGCTTGTATGGTGGCGAGTAACACTACTGGTCAGCAATGCAAGCCTTCTGAAGTCTCAATACCTGGCAAAGCTCTCAATGGCCACACATTTAAAACCACCGTAGTCAGCGGACCTATTCAATGTCAAATGGTCTGTGAGAATGATCCAAAATGCAGGAGTTACAACTTCCACAttctaacaaaaaactgtgaaataaaTGACGAGACCAAGGAAACGAAACCTCACGATTTCGTCACAGACGATCAAAGGTTCTACATGAAACGCGAAGATATTGATGAATGCAAAGTGTTTCCCTTCACCTGTGACGTCAATGCCGATTGTCAGAATACAGACAGCTCTTACATCTGTACATGTAAGGCTGGATACACTGGGGACGGAAAAACGTGTACAGAGATCGATGAGTGTTTAACGGGAAAACATAACTGCAGCCATGTGGCCATGTGCAACAACACTATTGGTTCATATAACTGCACTTGTAAGGAGGGATATGTTGGAGATGGACGAAACTGTTCAGATATCGATGAGTGTTCAACAGAAGAACTCAACTGCAGCCATGTGGCCGTGTGCAAAAACACCATTGGCTCATATAACTGCACATGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGCTCAACAGGAAAGTATAACTGCAGCCAGGTTGCCGTGTGCAACAACACAAATGGTTCATATAACTGCACTTGTGAGAAGGGCTAtgttggagacggacgaaaCTGTTCAGATATCGATGAGTGTTCAACAGGAGAACACAACTGCAGCCATGTGGCCGTGTGCAACAACACCTTTGGTTCATATAACTGCACTTGTAAGGAAGGATAtgttggagacggacgaaaATGCTCAGATATTGATGAATGCAAAGTGTTTCCCTTCACCTGTGACGTCAATGCCGATTGTCAGAATACAGACAGCTCTTACATCTGTACATGTAAGGCTGGATACACTGGGGACGGAAAAACGTGTACAGAGATCGATGAGTGTTTAACGGGAAAACATAACTGCAGCCATGTGGCCATGTGCAACAACACTATTGGTTCATATAACTGCACTTGTAAGGAGGGATATGTTGGAGATGGACGAAACTGTTCAGATATCGATGAGTGTTCAACAGAAGAACACAACTGCAGCAATGTGGCCGTGTGCAAAAACACCATTGGCTCATATAACTGCACATGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGCTCAACAGAAAAGTATAACTGCAGCCAGGTCGCCGTGTGCAACAACACAAATGGTTCATATAACTGCACTTGTAAGAAAGGATATGTTGGAGACGGACAAAACTGCTCAGATATCGATGAGTGTTCAACTGGAGAACACAACTGCAGCCATGTGGCAGTGTGCAACAACATCATTGGCTCATATAACTGCACTTGTCAAGAAGGATATGTTGGAGACGGACGAAGCTGCTCAGATATCGATGAGTGTTCAACTGGAGAACACAACTGCAGCCATGTGGCAGTGTGCAACAACATCATTGGCTCATATAACTGCACTTGTCAAGAAGGATAtgttggagacggacgaaaATGTTCAGGTTGTCCCAAAGACTGGGAGGCAAACGGCAAACATTGCTATAAACTGCATGCGAATAACTCCTATCGACTCGATAAACTAAACGATGCTCGACAAAAATGCAACGAAATGTCAGCATACCTGCCAATAATTGAATCGGAGCAGGAAAATGTCTTTATTGCTAACCTGATGATGATGAGCACCCCGCGGACAAGTTATATTAGGCTTGGTATGAAGCGAGAGAAAGGCAATTTGCTTTGGTTTGACGATGTATCAGCAGAGAGGGGGAATAACAACCGTTATAACGCATGGGCCAACGGTGAACCGAATCCGGGCAAGAATTGTGCTCACATGGAACTTGACTCCTCTGATCGTCCAAAGTGGAAAGGCAGCCATTGTGATTACCATTATCCCTTTTTTACAGCTCCTTTTCTCCTTTGTCAAAAATCGCGTTGATAAGATTAACGACTACTTTACCGTGCATGATTACCCAGTTGATATAATCGAATGTCTTTTTACcttcctgggcccggttgttcgaaagccgattaacttaatccaggattggtattggtgaaagtttcttttgcttattttggttttcaagctGGACTTCATCTAATGTAACGTTTTGCctaatatcagcgttgaacactATTTGGgatttaatctgggattagcgttaatcggcttctgaacaactgggccctgagtTATGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR050751	Family	Extracellular matrix structural protein	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan