Gene detail

Detailed information of XP_068688512.1 in Montipora foliosa

Genomic Location: chr14:17821416...17831811
NR annotation: XP_029208165.2, EF-hand domain-containing family member B-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068832411.1

TTCAATACAACTCGGACAGTTCATTTTCAGTGGAAGCAATTTTCTCTGAATTACTTCTCACACAAAACGATACCTGGACAAGCTATATATAGTCAGTTTAATACATCAGGAAAGTTACACTGCCGAGAGAATCTGGGCTTGAACGTTCGGGAAACTTATTCTAGATTTACCGCAAGAACTTGGGAGCGAAAAATGTTGAGCAACACCGGCAGATTTGTTGACCGAAATCCAGGAATTACTGCGgCGGGAAAGCTTTTCAATGTAACAGGAGAAACCTCCGGAGATTGCCTGCAAATAGCACAATGTCCCACCAGGCCAGAAACAGTGAAAAAGTTTCGAGGAACAACGCAACCAAAGGCAGGAAAAGAACGAGTGTTTTATGGCAGAGCAAATGACCCTGACGTTGCTTCACAAATTTCTCATGGAGTTAGCACCAAAACCTCGCTTGTCGCAGGGGATCTCGTTAACCCGACAAGGAAGAGCCTCTTTTCACAACGGATGCTTGAGAAAAAAGAGAGTCTTTATGCCAGCAGAAGGAATGCACCGTTAGGAAGCTCTCATGATCAGAGGCCAGGTTTACCAAAGGGAATTGGTCGAACTGATGTCATGTATGGAGTTAAAACCATCAAAGATGGAAGTGCAGGTGAAATGGTGAACCCTGCTAAGCCTGCAGCACAGGTAAACACAGAGTCTCTTCAAGGAAAACACCTTTACAAAGTCAGCCATCATGACTTTGAAGTTGGTGAAATGGTGGACAGGAAATATGACTGGAGCAGGATTCCTAAAGAAAGCAAGTTTGGTGTAGAAACACCACACAATAATGATGGCATACATGTTCAAAAAAGTCTCAAGTGGCTCCATGAGACACAACAggaaaaaacaacaaaaattgtctcAAAGCGAGTGGATGACTTCCGTGAAAGGACCCAACCACAACTTGGGAAAGTGCATGACCCAATCAAAGACACCTTGAGAGTTGCTCCTGATCATTCATTTGGTGTTATGGTAAAACCTGACGAGTATGGTGCGGGGGATTTGATTCACATGAGGGTTCCTAGCAAGTACCTTAGAGGCCGTGACAGAGAAAGAGGAGTGCTGGCTGCAGTGCGACATCACTTGAAAAAGGCCAACTACCACAATTTTCATGACCTTAAAGCAGCTTTTGAATATTATGATAAGGACAAGTCTGGGAAAATTTCCTTGAATGAGCTGCGTGAAGTCTGCATTCAATTTAACCTCCCTGTGGAACCCGAGCTGTTGGAATGCATGCTAGATTATTGTGATATTGACGGTGATGGACAGATAGATTACCAAGAGTTTGCAAACTTCCTGAATTGGAAGGACAAGATGCCATCAGGTGGAGTGCCAAGTTCAAAGACAAAGGAAGCAGAGAAAGGAGATGAAGCTCAGGAACAGACAGAAGGAGACGTGTCACCCACAAGACTTGAAAAACAGATTGATAAGGCTGTTGGTGGCTGGAACCCTTCATCCTCTCAATTTAATGCTGTAGCAGGAGGAATAAGGACAACAGGATGGCGAGCCTATGGAGTGCCAACTATCAGATCTGATTTACCAGCACCAACAACAAGACGAGTAGCTGACACAACGAACTACGGTGATGAATCTGATGCCTATGGGTTAATAAACCCATCAATCTACAGCAATCACGGAGTTCATGAAAAGGACTTTTTTCAACCAAGGGACCAATATGAGATCAGAAGAATCTTTGATGGAATAGGAGTTGAGATGACAAGTGATGTGTTTGAAAAGATCTGGGAACAGGCTAGCACTAGGCACCCAAGTGGGCTGGTCAGCGTGGAGTCTTTCAGAGGAATTATGGATGAAGTTAATGCCCAAAAACTTGCAGAGACACAAGTTGCATGATGCAATTTAATTGCCATGGATACATCAATTAAGAGTTCTAAACAGGAACACAATTATTTTTCACTAGGTTCCGACTAAAAAACTTATTAATGGCAAAAGAATATTTCCAATAAGTAATGTTTTCACAGAAAATGTTTATTATGAGTGTCTGAACCAaaagcaatattattatttatcatgttgtaaaaaaaactttcaacAACGTTCTTTGCAATTTTGTGACATCTTCATTCTAAGCAATAACAATACCAGTAATTCAAAAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1MMV1	EF-hand domain-containing family member B OS=Bos taurus OX=9913 GN=EFHB PE=1 SV=3
Q8N7U6	EF-hand domain-containing family member B OS=Homo sapiens OX=9606 GN=EFHB PE=1 SV=4
Q8CDU5	EF-hand domain-containing family member B OS=Mus musculus OX=10090 GN=Efhb PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006694 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR040193 all species →	Family	EF-hand domain-containing protein EFHC1/EFHC2/EFHB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12086 all species →	EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23929	EFHB; EF-hand domain-containing family member B	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.