Gene detail

Detailed information of XP_068689167.1 in Montipora foliosa

Genomic Location: chr14:8105301...8119923
NR annotation: XP_029203724.1, hypoxia-inducible factor 1-alpha [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137985445

ATGGCTTCCAAGACATCGAAAAACAGTGAATTTCAAAAGAAGAGAAGATCAAGAGATGCTGCACGATCGAGGCGAGGACAGCAAAATGATGAGTTTGTCGAGCTTGCCAATCAGCTTCCTTTACCAGTTGGCTTGTCCTCGCAACTGGACCGTCTCTGTATTATGCGACTTGTCAACAGCTATATTAAAATGAAAAACCTACTGCGGTCTTATGTGTCTCAAGACATAAAGAAGATTGCTGCTCTGAACTTGGCAAATAGTTCGGCGTATGAAAAATCCTCTCTGGAGGCACTTGATGGCTTTGTCTTTGTTGTTACTCCAGACGGCCAGTGTACTTATGTATCTGATAACATCAACCACTACATGGGCCTGACACAGATTGAAGTCACTGGTAACAGCTTGTACAAATACATCCATCCTTGTGACCACGAAGAACTAGCCAATCAGCTTGGAGGGCAGATTCCTCTGGAAGACATGGAAATCTTTGATGGCTTGTTCTGTTCAGATTCTGTCTTCATGATGAGTAATCACTTAAAGGGGGGATCCAAGAAAGCCATTCAAGAAAATCCACACAAGTCCTTCTTTCTGCGAATGAAAAGCACCTTGACAAGCCGTGGGAAAAGCGTTAACCTGCGTGCGTCAACCTACAGGGTGGTTCATTGCACTGGAAGCATGAAAACCTTGGTCAAAAAAACTAAAGAAGGAGAAGAGGAAAAAGTGCCACTCTTTATGGTAGCCATTGCTGTACCCCTTATGTTTTCGTCAACTTTTGAGGTTCCTTTGGACAGAGCCACTTTTACCAGTCGTCACAGCCTTGACATGAATTTCCTATCATGTGATGACAGTGCCACACGCTTGCTAGGATTTAGCCCTGCTGAGATTGTTGGCAAGTCGTGGTACCATTTCCTTCATGCATGTGACCTGGACACAGCTTTGGCTTGTCACAAAACATTGCTTACCAAAGGACAGTCAGTAAGCAAGTATTACCGCTTCTTGTTGCGCACGGGAGGTTGGGTGTGGTTACAAACCAAGGCAAACATTGTTTATGACAGCAAGACATGCCAGCCACAGTTTGTCCTCTGCACAAATTACATGATTGTGAGGGCAGATCGACAGGAATTCATTCTTTCAACAGAGCAAGTCAACCCTGTACCTGCACCCATGGCATTAGACCTGGTCATGAAGAAGGAAAAACCTGAACCCAGGGGCACCAGAAGAAAGCATTCTATTGTGTTGGAAGAACGTACCAAGCTGCTTAAGGCTGCCGCACACGAGCAACGTCAAACAAAAGAGGTTGCACCCAAACAGGAATCCACACTGGACAACACTTGCTGCATGACAACAAAAGAACCACCCAAAATTGCAAAGAAAACTTGCAAGTGTCTGGGTGAGGTCGATTGTGAGCACATGAACTTTCAGGACTGTCTGCCTGTAGCTTGGGACACAAATGAGGACCTTATTGAGCAACAAGAAAAGTATGAGCAAATCCTTAGTGATCACTACACCATCAGTCGTCAGCCGGGAGATGTGGAAAACAGCCCTGGAGACTACAGAACACCATTTATCCCATCACCAAGCGAAGATCTAAAGATTAATGCAGACCAAGAAAAAACAGATGAGGATGAAGAAAACTATGACGAGCGTGCACCCTTTATTCCACTGTCAATTGACGACACAGAGTTAGAGGATGATTTGTTGGTTGAAATACCCTTCATCGATTCGCCAATGACACCCTCGCCATCATCATGGTTACTCAATGCAGATGAGAGCATCCCCTCTCCAGGTGCTGCAGCAATTATTTCTATGCCAGCTCCAACCAAAGCTGCCCCACACAAAAAAGTGACGAGCCTTTCTGCATCATCCTCACCCATTGTGTCCAGGAAGGAGGTGCCCAGTGCAGTCAAAAGAAATGGTTATATCACTAATGATATGGCTTCCAGAGGAAAGGGCTTCTTTCCTAGCATCTCGTCTTGGGATGCTGAGGTGAATGCCCCAGTGCAGCAATTTGATCTCTTGCAAGGGGAGGATCTGCTTAAAGCACTGGATTGTGGTGACTTATGCTCCGCACTTTACGTGGTGTGA

Transcript

rna-XM_068833066.1

CTAATTTATTAAAATGTATGCTAGGCACGTCTCTTTGCATTAAAGTCACAGGCACAGAATTCATTTTACCATCCACGAGAAAGAATCACGCGAGAGCGGAATACACACGGTAGCAAGAGTTTCGAATCAACTTTCGTTTTGGAGTGAAAATTGACTTTAAAGCGCTTTTATTGCAAGGAACAGAAACCAGGAGTTGTTCGAATTTGCTGTCTTTCAACCCTGTAGCTCCTTTTTACTCAGAAGGTTTTAAGTACAATCCTCGACAGCGGCTCGAGACTGTGCCAAAGAACCGGATACGTGACATCAGCATACAGCGGGAAGAACGACAGAGGGTTCAcaacaaaatggcttccaagACATCGAAAAACAGtgaatttcaaaagaagaGAAGATCAAGAGATGCTGCACGATCGAGGCGAGGACAGCAAAATGATGAGTTTGTCGAGCTTGCCAATCAGCTTCCTTTACCAGTTGGCTTGTCCTCGCAACTGGACCGTCTCTGTATTATGCGACTTGTCAACAGCtatattaaaatgaaaaaccTACTGCGGTCTTATGTGTCTCAAGACATAAAGAAGATTGCTGCTCTGAACTTGGCAAATAGTTCGGCGTATGAAAAATCCTCTCTGGAGGCACTTGATGGCTTTGTCTTTGTTGTTACTCCAGACGGCCAGTGTACTTATGTATCTGATAACATCAACCACTACATGGGCCTGACACAGATTGAAGTCACTGGTAACAGCTTGTACAAATACATCCATCCTTGTGACCACGAAGAACTAGCCAATCAGCTTGGAGGGCAGATTCCTCTGGAAGACATGGAAATCTTTGATGGCTTGTTCTGTTCAGATTCTGTCTTCATGATGAGTAATCACTTAAAGGGGGGATCCAAGAAAGCCATTCAAGAAAATCCACACAAGTCCTTCTTTCTGCGAATGAAAAGCACCTTGACAAGCCGTGGGAAAAGCGTTAACCTGCGTGCGTCAACCTACAGGGTGGTTCATTGCACTGGAAGCATGAAAACCTTGGTCAAAAAAACTAAAGAAGGAGAAGAGGAAAAAGTGCCACTCTTTATGGTAGCCATTGCTGTACCCCTTATGTTTTCGTCAACTTTTGAGGTTCCTTTGGACAGAGCCACTTTTACCAGTCGTCACAGCCTTGACATGAATTTCCTATCATGTGATGACAGTGCCACACGCTTGCTAGGATTTAGCCCTGCTGAGATTGTTGGCAAGTCGTGGTACCATTTCCTTCATGCATGTGACCTGGACACAGCTTTGGCTTGTCACAAAACATtgcTTACCAAAGGACAGTCAGTAAGCAAGTATTACCGCTTCTTGTTGCGCACGGGAGGTTGGGTGTGGTTACAAACCAAGGCAAACATTGTTTATGACAGCAAGACATGCCAGCCACAGTTTGTCCTCTGCACAAATTACATGATTGTGAGGGCAGATCGACAGGAATTCATTCTTTCAACAGAGCAAGTCAACCCTGTACCTGCACCCATGGCATTAGACCTGGTCATGAAGAAGGAAAAACCTGAACCCAGGGGCACCAGAAGAAAGCATTCTATTGTGTTGGAAGAACGTACCAAGCTGCTTAAGGCTGCCGCACACGAGCAACGTCAAACAAAAGAGGTTGCACCCAAACAGGAATCCACACTGGACAACACTTGCTGCatgacaacaaaagaaccacccaaaattgcaaagaaaacttgcaaGTGTCTGGGTGAGGTCGATTGTGAGCACATGAACTTTCAGGACTGTCTGCCTGTAGCTTGGGACACAAATGAGGACCTTATTGAGCAACAAGAAAAGTATGAGCAAATCCTTAGTGATCACTACACCATCAGTCGTCAGCCGGGAGATGTGGAAAACAGCCCTGGAGACTACAGAACACCATTTATCCCATCACCAAGCGAAGATCTAAAGATTAATGCAGACCAAGAAAAAACAGATGAGGATGAAGAAAACTATGACGAGCGTGCACCCTTTATTCCACTGTCAATTGACGACACAGAGTTAGAGGATGATTTGTTGGTTGAAATACCCTTCATCGATTCGCCAATGACACCCTCGCCATCATCATGGTTACTCAATGCAGATGAGAGCATCCCCTCTCCAGGTGCTGCAGCAATTATTTCTATGCCAGCTCCAACCAAAGCTGCCCCACACAAAAAAGTGACGAGCCTTTCTGCATCATCCTCACCCATTGTGTCCAGGAAGGAGGTGCCCAGTGCAGTCAAAAGAAATGGTTATATCACTAATGATATGGCTTCCAGAGGAAAGGGCTTCTTTCCTAGCATCTCGTCTTGGGATGCTGAGGTGAATGCCCCAGTGCAGCAATTTGATCTCTTGCAAGGGGAGGATCTGCTTAAAGCACTGGATTGTGGTGACTTATGCTCCGCACTTTACGTGGTGTGAGAACTTTTTAGTATGAAGCTAGAAAAGAGGGTAATATAGTGTGTTGGTACAGTATCTTATTCTCTGACTAAATGTTGAAACATAGTTGGTCAACATTAACTTTGATGAGTGGCAATGTTGGATACACATATAAACGCACTTAGTACCAACATATGCCAGCATCTGGTTGGGATCTATGCATTGGAATAATGACTtgagccgtgttcacactcaacattgattatgatcaactgaagtgtatatcaggctatcatactccatgtgagaaatagaaaacatgtaccgtgtttctatcgagttatagaaacacaattgaaagtttgggagaacaaGAAATGCTGTTGGAACACGAGCCACAGGCgggtgtttccacagctttttcgagtgtttctataactcgatagaaacacggagtacatgttttctatttcttttagaaaacaacgcaaagagaaaaaggaaaacaacttgttaactctaattatcaaaatgtaaatgctctgtgtctccatcgagttatagaaacacgatttttaaccaatcagcgtgCATACTTTCTTAGGACTGTATTCtaatcaattttattcaattatggttctgttcacatctgcgaaaattcaaatgcaatacacagggtaacctcgcagtgCGAGACAAAATGACGCCAtatcgcgtggctgccacgattatcatcaccatcatgtgcTTGAGGTGAGGAGAGAACCACGGATAGCTTCCGAGAATAagagaagacaaatccaaaccttcgctccataaagcgatgCTCATACCACCATGtgctcgccattctgttcaattacgcattgtaattacttcaaacaacccctttgaggttgtttgaagtaattataatccagttTTAATCCGGGActgtgaacccatttcatatttaatttgatCATAATCaaggcctaatgtgaacacggctttggTCTCATCCATTTTGGGGATCCAGCTCGTTTTTCCAACATCGCTGCATCTAGGGAAAATAAAACTTGACTGTTTgatcaaaaacaaacttttggCTAGCATTAATATTCAAGATTAGCTTTTTGTCATCCAATGTGTTGGCCAGAAGCCAGTTGATTTAGCAGAGGCTTTGCAACTAGAATGATCATATCTTTCCACGTGAAATTGTCCTTTGCATCATTAGTTATTCAAACAAGCAGCGTTTAATAACCAAAACTTTTATAGATTGGAGATTATATAGTCACATCATGACATTAATGGTAATTTTTGTAGGGGGATCCTTTAATGTGTGCTGTTGGTCTTTCGTATTGTTTTATTGCATATATTGCAACCTAGGGTCTGTTAATGTGTCATACTCTTGGACGTCATGGCTTAAGAACTGAAATAATTATTGGGTGCTTTATTTTATtgtcgtcttttttttttggaatgtcAAGAATAAAAGtgcatggacaaaataagttttttttttcaaagatttggAGTCTTGAattccaaaaataaatttttcttaaCTGATTTATAACAATAGTCTGTGCTgtccaataatttttattgttttcaaattgaaTAATTCGTGTTACTTATAATGATTGAGCTGCCTCTGAATGCAAAAATCGGTAAGTCATGCCGCTTGACCAATTCACAGATAGATTGTGTTGCTAGGAAGTATCCAGAATTCGCTTACTACTGATCTCCAAGTCAAAAGAAATTGGTCAGttgaccaaaaatcaaagaaaaatcccATTTGCTGGTAATATTGGATTTAGAGGCTGCAAAATAACtaataattaaacaatagaaTGTATGCAATGTAAATTTCAGGGCAGACAACAGCATCTTTGGGCAGTGATATGAAACCATATCAttccaataataattattattgaaacaAGTTCTGTTTCTCTTTCCAGCTCAAAGGATCTTTACACGAATTTGATAAACTAAACAAAACTCGAGAGGAATTGCAGAATAAccaatatttttcaattttcaaaacaTGACAGAAGGCAGAAATGAAAGCTGCTGCAATTATAAGTAATTATTCCCTTTTAACGAAAAGtttaatattgctttttttcaaGGCTGTGTTTTAGGTTTGTCTTGAAGTTTGAGTTTTTTATTCTATTGGGATAaagcctttttcatttcaaatgaGGTACCCGGTATTCAAAGTTCCGCACTAGCTGCAGTGTTAATGCAAAGAAATCTGGAAATGAGTATTTGCAGCAGGTGATACGCCTCCAACCGAAAATGATTGGAAAAGAGTTGCATTAGAAACATTCAATAAGCTATGGTGAACAGTTTATCCCATTAACAAATGACCCTGGTTCCAATCATTTGTTCAAGACTTAAAGTCATAAATTATTGTCAAGACATTTTTTTACATGTTATCGCTAAGACACTTTGTATAACTCGTAAAGATTTTAATGCAAGGATCCCCAAAATTATAGTGCAATATGCTTGTATAGGGGACAAAAGTGTGATTCAGCAATATTTGAATAAAACTACTGAAAACTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q309Z6	Hypoxia-inducible factor 1-alpha OS=Eospalax fontanierii baileyi OX=146132 GN=HIF1A PE=2 SV=1
Q0PGG7	Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1
Q9XTA5	Hypoxia-inducible factor 1-alpha OS=Bos taurus OX=9913 GN=HIF1A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004064 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF08778 all species →	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR001067 all species →	Family	Nuclear translocator	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR014887 all species →	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08268	HIF1A; hypoxia-inducible factor 1 alpha	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068689167.1 across 36 RNA-seq samples of Montipora foliosa. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.