Gene detail

Detailed information of XP_068689304.1 in Montipora foliosa

Genomic Location: chr2:64459677...64461860
NR annotation: CAH3042614.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_068833203.1

AATTATCATGGACTTTTTTACGGGAAATTGCCACAAAAAGCTGTACTTTTGGGAACAGTGCGATACTATGGCGAAACTTTGGGCAGCAGTTTTCTtgataacattatttttttctcaactaAGCGCTTTCATCGTTCCTACTGCTTTGGCAACGGCCCTTCTTTCCTCTATGGTCGAATTCCTTCGGTGTCCATTTGAAGAGTGTTGCACAGACAAGTGGATTTCACCAAACATTACTGGGTTGCAGTCCTCTCTAGAAAGACGTGTCTTTGGTCAGCATTTGGTCACTGAAACGGTGCTGAAAGCTATTAAGGGACATTTAAATAACAAGTCTCCGAATAAAGCGTTGGCCCTTTCGTTTAATGGCTGGACAGGGTCGGGGAAAAACTTTGTAAGCAGAATCATCGCCGAACATTTATTTCGATATGGAATGGAGAGTAAATATGTTCATCAGATTATTGCAACTCACGAATTCCCCCACCAGTCATCACTGGATTTATATAAACGAAAACTAAGAGATCTCGTCGCAACATCGGTAGCCAAGTGCCCCAGGTCTTTGTTTATCTTCGACGAAATGGATAAGATGCCCATCGGGCTCATTGACGTTTTGAAACCCTTTCTGGACCACTACACGGAAGTTGGAAAAGTGGATTACCGTAGGAGTATCTTTATATTTCTTAGCAACACGGGAGCACATCTGATAAACGATGAATTGCTGACTCATTGGAAGGAGGGAAAGAAACGGGAGGATATTGGAATCAAACACATGGATAAGATTATAAATCTTGGTGAATTCAACACCAAAGGAGGATTCTGGCATTCATCTCTCATTGAAAAAAATCTTATAGATTACTTTATTCCATTTCTTCCTTTGGAGAGATCTCACATTAAGATGTGTGCTAAAGCTGACTTGGAACAGAAGAAACTTCCAGTTACTGAAGAAAACTTGAATAGTGTTGCAGATGAGTTACTTTATTTCCCAGAAGACTTCAAGGTGTTTTCTAAGTCAGGATGTAAGAAAGTATCAAGCAAAGTTGATTACATCATGTTATAAATTTTCAAACAATACAAGCATGCATTCCTGTAGTTTGGTATGAAATACATTCTAAATCACTTTGTGCTGGTTTTAAAGGTGGAACCAGAAAATTCATTAAGAGGTGGCTGACCGCTAACTGGTTGGTGGAGCAACAGACTAATGTGTTTGTGAGATCACCTCCACCAGACCATTactcagggtcttcaaataactgaggagaaagttcttCCTTCGCAGTGCAATCTGCAAAtggtaagactttcaagtcttctcagatataaggactataaaccgtaggtcgcgtctcacaacccttgttcaacACTGTGGGACTTCCTCGTACTATTCAAAAAGAGTAAGGGTatggagttcctggtgttgtggtgtGGACTAAATTCTCCAGCAAAATGTGGCCGGCTCAGCAGTGATGTCTCAAAAAGGCTTATGGTTTGTGAGGCAATGTAGGAAAAAACAGCGATAAGTCAAAGGGGATTTTGCCGAGTGCtggtacatgtagatgtaaAAGAAATTGTGGTGAGAAGCATTAACCCCCTTCTCTCTATTCTCTCCCACCCACAGACAAAACGAATACAAAATCAAAAAGGCCCGACATGTACTCTAAACTACCTGTGTTGATTTACACCCAGCAGAATTCTAATTAAGAAGTTGCATACTTACTTGGTTTAAATGTCTTTTACTTATCCTGCCATTGACTCGGTTTACATTCACCATGCACAGACCCAAGTACTAGCTGAATTAGAACAGTGTGAATATGTCtaaatttttaatttctatAAAATTCCTGGGTACAAATTCATTGCTAcaatatttcaacatttttgaaatgaatTAATTCATAAGTGTATCCTTTCTTTCCCCTTAATAAAGGAACAAGCAAGATTTATCTCTTCTGCATGTGcttaaaagaaattttgctCAAATCAAGAAGTTGTGGCACGAAACGTTTATATAGTACTGCACTTTAATGCCTTTGTAGTGAAGTGCAATGAAACGTGACTTCTTGATTACGTAACCAATAGTAAAAAGAAATATACTGGGAGCGCGTAGATATCTTCAGTTACATGTTCAGAGTGGGATAAAAATGTAGCTTTTGCTTTGCGTATTAAATACGTACGTGGGAAACCTGA

Protein

Uniprot

Uniprot term	Description
Q60HG2	Torsin-1A OS=Macaca fascicularis OX=9541 GN=TOR1A PE=2 SV=1
Q68G38	Torsin-1A OS=Rattus norvegicus OX=10116 GN=Tor1a PE=1 SV=1
O14656	Torsin-1A OS=Homo sapiens OX=9606 GN=TOR1A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06309	Torsin	Torsin	Family	Interproscan
PF21376	TOR1A_C	Torsin-1A, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010448	Family	Torsin	Interproscan
IPR001270	Family	ClpA/B family	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049337	Domain	Torsin-1A, C-terminal domain	Interproscan
IPR017378	Family	Torsin 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10760	TORSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0051085	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22990	TOR1; torsin-1	-	Membrane trafficking	ko04131	deepkoala