Gene detail

Detailed information of XP_068689727.1 in Montipora foliosa

Genomic Location: scaffold_263:51230...75435
NR annotation: XP_029186824.2, centrosomal protein of 63 kDa-like isoform X1 [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137986684

ATGGAGACGTTTACCAACTTGTTCGCTGATAGCTTGATCCGAAAAGGCTCATTGACGTCGTGCGAGGAAGAATTAAGAGAGCTGATGCGGCAGATTGATCTGATGGTGACTGCCAAGAAGTCTGAGTGGGAAAATCACATGCATGCTGTTCAGATACAGTTGGACAAGAAAAACAAGGAACTTCAGTTTGCGAAAGATCAGCTGGAACACAAATGTCAGGAGGTTGGGGAGCTACAGCATAAAGTGGATGAGGTGGAATTAACCCAAAGGGATTTGGTTGAAGAGTATGAAGAGCATGTGATTAATCTTAAAGAAGAGGTTGACAAATTGAAGCATGAACACGACAAACTGAAGAGGAAAAGTAACAAGCAAACAATTCAGGTTGAAAAGGAAAGAGATCAGCTTTTGGTGGATCTTAAGTCTAGAGATTCAGAAGTGAGTCAATTGAAGGATAAAATAGAGGAATATCAAGCCAAAATGTCAGAATTGGATGTAGGAAAAAAAGCGAGAGATGACCGCATCAGAGGACTGGAGAATCAAAAGAAAGCTTTGATTGAGAAGTGCGATTCGATGCAGCAACAGTTGCTAGGATACCAAGCACAGCTCAACAAAAGAAGGCAAATGATGGAAAACCTTGAACGTGATCATCAACAGGAAATGGCTGAGGTGCATTCTCAGCTTGATCGTGCAAAGGAGGAATGTGATGGCACCGAAGATACAGTTCAACAGTTAAAGAGTTCATTAGAAGAAGCACTAGCTTCAAACAGAGAACAAGCTTCTGACATCGCCAACTTGCAAGATGAACTTAGAAGGATTCATTCTTCTTTTCAACGTCTGGAAGAACAAAATGCACATCTGCAGATGGAACTTCAGGCAAGAGATGATCTCATTAGGGCGGCCGAAGAAGACCAGAGACAACATTCAGAGGATGTATCAAAACTAGAACAGAGCTTGATCGTGAAAGATGAATTTATCAGACAGTTAAAGGAAGGAAGTAGACGAACACAAGATATTGAATTAAGAAGACTCAAGGAGGATCTTAGAACAAGTCGATTAGAAATACAATCACATTTGGATACGAGCCAGTACCAGAAGAACGAAGTCAGTCACTTAACCAAAAAGCTCGAAAATAGCAAAAATGAACTTTCCAAACTGCAGGCAGAGCTTAGCAGGAAGGAGGAGCAAGTTAAATATATTGAAGAAAATGACCTTAAACAACTAGCGCTTGAAAATTCAAAGTTAAAGGAACAAATTTCAACCGGAGATGAAGGACACCAAGCTGAAGTAGAAGGAATGAAGCAACAGATAGCTAATATGACTGCTGACTTGCATAAAAGGGATACAGCAATGGCTTCTATTACTGAACGAGCTCAGCGAATGGAAAAAGATCTGCGAGAGACAACTTCAAAACTGGATCGGACAGCAGCTGAGCTCCAGGTAACAAATGCTCAGCTCGAAGCGTTAAGACTTGAAAACAGGCATTTGCGAGATACAGCCTTGAATGATCAGCTGACGGATTTATCGGATTTGCATGGTCATGGCAACCTTCAGCTCGTTGGGCAACTTGAGGATGATAACAGGAACTTGAGAACTGAGGTTGCCAGTCTCCGCGAGGAGCTATCAACATTAGAGGCGAAATATCAGGATAAATACAGGAACGCCCTGAGGAAAAACCAAGATGTTTTGGCAGACATTAAGGACAACGAATTCAGACGTCACAGTGAGCTTCGTTCGGATTCTGACCGTAAAGTAGCGTCATTGGAGGCCCGTCTCGAAGCTACCATAAAGAAATATGAAACACAACTGCACAACCTACAAATAGAGAATGAGCGGCTGAAACGCAGTACTACGTCAGCGAGCAATAAGACCAATGGTGCTCCTCAGCCCCTAATGTCAACATCAACCAAGGCAATACCTGAATATGCTCCCAGAAGGCCCGTGGATGTGAGTCAAACTAGCACTTCGAGTGGATACACAGACACAGAGGCACTGATTCAAGCTAATGCCACTGCAGGCCCGGCTCGATCAGATTCAGAGGTGTCCCTCACCTCAACTGGTGTTGCTCGGCGCTCTTCTATCACATCTGACTTCCTGGCAGAGGAAAACCGACGAGAAAAAGAACTGGAGCGCATTCTGGACAGAAGGATAGAAGACTTAAAAACCAACACCGACTATATTATACGAAAATACACTTGA

Transcript

rna-XM_068833626.1

AGACCGCTTGGCACTTATAAGCGCTCGCTTTCAAATGATGGTTGATTTACAAGTTGTAACTGTAAGAACGTGTAGCGTTTGGAGAAAATGAATCCTTAAAACCTCAGAAAAGGCAAGGGAAAGAGATTATACCGCTCCTGGACTTTAGTGGCAGAAATGAAACTAGGGAGTTCGAAAATTTTGAGCGGTCGGTGATCGAACTGTGCGCTGCCAAAAAGGCCTTCTTCGGCGTGACAAATCGGTAGATGTACATCATTGAATTATTACAATGGAAACTAAGATGTGATTGATATGAAAAACGGTGGAACTCAAAGGCGAATTGTGTAGTTTGCAAGTAAGATAACCTGTGAATATGGAGACGTTTACCAACTTGTTCGCTGATAGctTGATCCGAAAAGGCTCATTGACGTCGTGCGAGGAAGAATTAAGAGAGCTGATGCGGCAGATTGATCTGATGGTGACTGCCAAGAAGTCTGAGTGGGAAAATCACATGCATGCTGTTCAGATACAGTTggacaagaaaaacaaggaacTTCAGTTTGCGAAAGATCAGCTGGAACACAAATGTCAGGAGGTTGGGGAGCTACAGCATAAAGTGGATGAGGTGGAATTAACCCAAAGGGATTTGGTTGAAGAGTATGAAGAGCATGTGATTAATCTTAAAGAAGAGGTTGACAAATTGAAGCATGAACACGACAAACTGAAGAGGAAAAGTAACAAGCAAACAATTCAGGTTGAAAAGGAAAGAGATCAGCTTTTGGTGGATCTTAAGTCTAGAGATTCAGAAGTGAGTCAATTGAAGGATAAAATAGAGGAATATCAAGCCAAAATGTCAGAATTGGATGTAGGAAAAAAAGCGAGAGATGACCGCATCAGAGGACTGGAGAATCAAAAGAAAGCTTTGATTGAGAAGTGCGATTCGATGCAGCAACAGTTGCTAGGATACCAAGCACAGCTCAACAAAAGAAGGCAAATGATGGAAAACCTTGAACGTGATCATCAACAGGAAATGGCTGAGGTGCATTCTCAGCTTGATCGTGCAAAGGAGGAATGTGATGGCACCGAAGATACAGTTCAACAGTTAAAGAGTTCATTAGAAGAAGCACTAGCTTCAAACAGAGAACAAGCTTCTGACATCGCCAACTTGCAAGATGAACTTAGAAGGATTCATTCTTCTTTTCAACGTCTGGAAGAACAAAATGCACATCTGCAGATGGAACTTCAGGCAAGAGATGATCTCATTAGGGCGGCCGAAGAAGACCAGAGACAACATTCAGAGGATGTATCAAAACTAGAACAGAGCTTGATCGTGAAAGATGAATTTATCAGACAGTTAAAGGAAGGAAGTAGACGAACACAAGATATTGAATTAAGAAGACTCAAGGAGGATCTTAGAACAAGTCGATTAGAAATACAATCACATTTGGATACGAGCCAGTACCAGAAGAACGAAGTCAGTCACTTAACCAAAAAGCTCGAAAATAGCAAAAATGAACTTTCCAAACTGCAGGCAGAGCTTAGCAGGAAGgaGGAGCAAGTTAAATATATTGAAGAAAATGACCTTAAACAACTAGCGCTTGAAAATTCAAAGTTAAAGGAACAAATTTCAACCGGAGATGAAGGACACCAAGCTGAAGTAGAAGGAATGAAGCAACAGATAGCTAATATGACTGCTGACTTGCATAAAAGGGATACAGCAATGGCTTCTATTACTGAACGAGCTCAGCGAATGGAAAAAGATCTGCGAGAGACAACTTCAAAACTGGATCGGACAGCAGCTGAGCTCCAGGTAACAAATGCTCAGCTCGAAGCGTTAAGACTTGAAAACAGGCATTTGCGAGATACAGCCTTGAATGATCAGCTGACGGATTTATCGGATTTGCATGGTCATGGCAACCTTCAGCTCGTTGGGCAACTTGAGGATGATAACAGGAACTTGAGAACTGAGGTTGCCAGTCTCCGCGAGGAGCTATCAACATTAGAGGCGAAATATCAGGATAAATACAGGAACGCCCTGAGGAAAAACCAAGATGTTTTGGCAGACATTAAGGACAACGAATTCagACGTCACAGTGAGCTTCGTTCGGATTCTGACCGTAAAGTAGCGTCATTGGAGGCCCGTCTCGAAGCTACCATAAAGAAATATGAAACACAACTGCACAACCTACAAATAGAGAATGAGCGGCTGAAACGCAGTACTACGTCAGCGAGCAATAAGACCAATGGTGCTCCTCAGCCCCTAATGTCAACATCAACCAAGGCAATACCTGAATATGCTCCCAGAAGGCCCGTGGATGTGAGTCAAACTAGCACTTCGAGTGGATACACAGACACAGAGGCACTGATTCAAGCTAATGCCACTGCAGGCCCGGCTCGATCAGATTCAGAGGTGTCCCTCACCTCAACTGGTGTTGCTCGGCGCTCTTCTATCACATCTGACTTCCTGGCAGAGGAAAACCGACGAGAAAAAGAACTGGAGCGCATTCTGGACAGAAGGATAGAAGACTTAAAAACCAACACCGACTATATTATACGAAAATACACTTGAAACTCTAAaaggtttacatgcagaaaggaaaggaatcgAATTCTTCACTGCAGACTGTGGAAATAGCGAAATAATTTATAAGCCATGTGCGGAagaaagcaataatttattgaataatttatttcattttctcgTATTGGACAAGTCACAAAGACATGGCTGTTTGTTTGCGAATCGAGGTTTAACAATGCGAGTTTTGTAAATGAATGAGATTTCAGAAAAGGCTGGTGGCAACTTCTCAGGTATACACATGATCTTTTAAGAGTCACCTGTGCCTTCTTTTATCAAGGGGGCtaggtagggggggggggggggtgcctTGGCACAAATTTAAAAAGCACGGGTTGAAATACATGCCAGAAAAATAAAACTAGAGTACAGAGTTATTCAAACCTTGATGCCTTTTAGAGAAATGGTTTTCGACTCTAAACATAGTTACGAAaacat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R703	Centrosomal protein of 63 kDa OS=Macaca fascicularis OX=9541 GN=CEP63 PE=2 SV=1
Q5NVN6	Centrosomal protein of 63 kDa OS=Pongo abelii OX=9601 GN=CEP63 PE=2 SV=1
Q6PGZ0	Centrosomal protein of 63 kDa OS=Danio rerio OX=7955 GN=cep63 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17045 all species →	CEP63	Centrosomal protein of 63 kDa	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031470 all species →	Domain	Centrosomal protein Cep63/Deup1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18875 all species →	SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0098535 all species →	Biological Process	de novo centriole assembly involved in multi-ciliated epithelial cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16763	CEP63; centrosomal protein CEP63	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068689727.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

59.1Max TPM

17.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	17.21	59.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710854	Polyps	Polyps	OA4 day9	not recorded	SRP199550	59.14
SRR12786895	Polyps	Polyps	OA4 day0	not recorded	SRP199550	45.75
SRR12786904	Polyps	Polyps	OA4 day0	not recorded	SRP199550	41.61
SRR12710865	Polyps	Polyps	OA4 day3	not recorded	SRP199550	34.95
SRR12710845	Polyps	Polyps	OA4 day3	not recorded	SRP199550	31.99
SRR12710866	Polyps	Polyps	OA4 day3	not recorded	SRP199550	31.58
SRR12959198	Polyps	Polyps	E4 day15	not recorded	SRP199550	21.89
SRR12710853	Polyps	Polyps	OA4 day9	not recorded	SRP199550	20.73
SRR12959181	Polyps	Polyps	E4 day0	not recorded	SRP199550	20.08
SRR12959199	Polyps	Polyps	E4 day15	not recorded	SRP199550	19.86
SRR12959200	Polyps	Polyps	E4 day15	not recorded	SRP199550	19.53
SRR12786903	Polyps	Polyps	OA4 day0	not recorded	SRP199550	19.48
SRR27940177	Polyps	Polyps	not recorded	not recorded	SRP199550	19.04
SRR12904791	Polyps	Polyps	not recorded	not recorded	SRP199550	18.87
SRR12959237	Polyps	Polyps	E4 day0	not recorded	SRP199550	18.83
SRR27940179	Polyps	Polyps	not recorded	not recorded	SRP199550	18.58
SRR12904792	Polyps	Polyps	not recorded	not recorded	SRP199550	18.42
SRR12710852	Polyps	Polyps	OA4 day9	not recorded	SRP199550	17.91
SRR12959224	Polyps	Polyps	E4 day3	not recorded	SRP199550	17.49
SRR12959238	Polyps	Polyps	E4 day0	not recorded	SRP199550	17.48
SRR12959225	Polyps	Polyps	E4 day3	not recorded	SRP199550	17.24
SRR12959226	Polyps	Polyps	E4 day3	not recorded	SRP199550	17.13
SRR27940180	Polyps	Polyps	not recorded	not recorded	SRP199550	16.66
SRR12904780	Polyps	Polyps	not recorded	not recorded	SRP199550	16.64
SRR12959212	Polyps	Polyps	E4 day9	not recorded	SRP199550	16.14
SRR12959213	Polyps	Polyps	E4 day9	not recorded	SRP199550	13.66
SRR12959185	Polyps	Polyps	E4 day21	not recorded	SRP199550	4.05
SRR12959187	Polyps	Polyps	E4 day21	not recorded	SRP199550	3.46
SRR12959186	Polyps	Polyps	E4 day21	not recorded	SRP199550	1.36
SRR12807380	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12849112	Polyps	Polyps	OA4 day0	not recorded	SRP199550	0.00
SRR12927879	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR12959211	Polyps	Polyps	E4 day9	not recorded	SRP199550	0.00
SRR12963483	Polyps	Polyps	E4 day0	not recorded	SRP199550	0.00
SRR9129315	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613518	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.