Genomic Location: scaffold_423:480539...494023
NR annotation: XP_029211136.2, cytochrome b5 reductase 4-like [Acropora millepora]
Species Montipora foliosa · all data for this species · gene families
| CDS |
| LOC137988614 |
| Transcript |
| rna-XM_068834601.1 |
| Protein |
| XP_068690702.1 |
| UniProt accession | Description |
|---|---|
| Q28CZ9 | Cytochrome b5 reductase 4 OS=Xenopus tropicalis OX=8364 GN=cyb5r4 PE=2 SV=1 |
| Q502I6 | Cytochrome b5 reductase 4 OS=Danio rerio OX=7955 GN=cyb5r4 PE=2 SV=1 |
| Q54NC1 | NADH-cytochrome b5 reductase 1 OS=Dictyostelium discoideum OX=44689 GN=cyb5r1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004115 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00970 all species → | FAD_binding_6 | Oxidoreductase FAD-binding domain | Domain | Interproscan |
| PF04969 all species → | CS | CS domain | Domain | Interproscan |
| PF00175 all species → | NAD_binding_1 | Oxidoreductase NAD-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017927 all species → | Domain | FAD-binding domain, ferredoxin reductase-type | Interproscan |
| IPR017938 all species → | Homologous_superfamily | Riboflavin synthase-like beta-barrel | Interproscan |
| IPR039261 all species → | Homologous_superfamily | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR008978 all species → | Homologous_superfamily | HSP20-like chaperone | Interproscan |
| IPR008333 all species → | Domain | Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain | Interproscan |
| IPR007052 all species → | Domain | CS domain | Interproscan |
| IPR001834 all species → | Family | NADH:cytochrome b5 reductase-like | Interproscan |
| IPR001433 all species → | Domain | Oxidoreductase FAD/NAD(P)-binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19370 all species → | NADH-CYTOCHROME B5 REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
XP_068690702.1.Transcript abundance of XP_068690702.1 across 36 RNA-seq samples of Montipora foliosa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 7 | 0.17 | 1.94 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR12710853 | Polyps | Polyps | OA4 day9 | not recorded | SRP199550 | 1.94 |
| SRR12786895 | Polyps | Polyps | OA4 day0 | not recorded | SRP199550 | 1.46 |
| SRR12710852 | Polyps | Polyps | OA4 day9 | not recorded | SRP199550 | 1.14 |
| SRR12786904 | Polyps | Polyps | OA4 day0 | not recorded | SRP199550 | 0.96 |
| SRR12710866 | Polyps | Polyps | OA4 day3 | not recorded | SRP199550 | 0.34 |
| SRR12710865 | Polyps | Polyps | OA4 day3 | not recorded | SRP199550 | 0.24 |
| SRR12959198 | Polyps | Polyps | E4 day15 | not recorded | SRP199550 | 0.14 |
| SRR12710845 | Polyps | Polyps | OA4 day3 | not recorded | SRP199550 | 0.00 |
| SRR12710854 | Polyps | Polyps | OA4 day9 | not recorded | SRP199550 | 0.00 |
| SRR12786903 | Polyps | Polyps | OA4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12807380 | Polyps | Polyps | OA4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12849112 | Polyps | Polyps | OA4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12904780 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12904791 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12904792 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR12927879 | Polyps | Polyps | E4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959181 | Polyps | Polyps | E4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959185 | Polyps | Polyps | E4 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959186 | Polyps | Polyps | E4 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959187 | Polyps | Polyps | E4 day21 | not recorded | SRP199550 | 0.00 |
| SRR12959199 | Polyps | Polyps | E4 day15 | not recorded | SRP199550 | 0.00 |
| SRR12959200 | Polyps | Polyps | E4 day15 | not recorded | SRP199550 | 0.00 |
| SRR12959211 | Polyps | Polyps | E4 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959212 | Polyps | Polyps | E4 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959213 | Polyps | Polyps | E4 day9 | not recorded | SRP199550 | 0.00 |
| SRR12959224 | Polyps | Polyps | E4 day3 | not recorded | SRP199550 | 0.00 |
| SRR12959225 | Polyps | Polyps | E4 day3 | not recorded | SRP199550 | 0.00 |
| SRR12959226 | Polyps | Polyps | E4 day3 | not recorded | SRP199550 | 0.00 |
| SRR12959237 | Polyps | Polyps | E4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12959238 | Polyps | Polyps | E4 day0 | not recorded | SRP199550 | 0.00 |
| SRR12963483 | Polyps | Polyps | E4 day0 | not recorded | SRP199550 | 0.00 |
| SRR27940177 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR27940179 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR27940180 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR9129315 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
| SRR9613518 | Polyps | Polyps | not recorded | not recorded | SRP199550 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MFOLI_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Montipora foliosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 33 | XP_068673828.1 | 0.982732820048729 |
| Negatively correlated | 3 | XP_068686518.1 | -0.424853741951656 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Montipora foliosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
