Gene detail

Detailed information of XP_068691237.1 in Montipora foliosa

Genomic Location: chr2:9415938...9429896
NR annotation: XP_015776455.1, PREDICTED: tetratricopeptide repeat protein 28-like [Acropora digitifera]
Species abbreviation MFOLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC137989295

ATGGTGGATAGGAAGTTGGGCAATTTGGAGCGGAACATACAAGAGCTTAGCATTGCAAGAAAAGAGGGAAACAGACGAAGGAAGGGTTTGGCTTGTTTCAATCTGGGAAAGTACTATCATGGCATAGCAGACTTTAAACAGGCCATAAAAAATTATGCAGAAGCATTAACCACTTTTAAGGAATTGGGTTTAAGGCCCGAAGAAGGAAAAGCCTCTTGTAATCTCGGCAATGCTTATAACAGTCTGGGCAATTTTAAGCAAGCCATAGAGTATTACAATCAAGATCTTAGTATTGCAAAAGAAGTAAAGGACAGGGCTCGGGAAGGAAGAGCCTATTGCAATCTCGGCAGCACTTATCACAGTATGGGCAAATTTAAGCAAGCCATAGAGTACCATAATCAAGGTCTTAGTATTGAAAAAGAAGTAGGGGATAGGGCCAGAGAAGGAAAAGCCTATGGAAATCTCGCCAATGCTTATTGCAGTCTGGGCAATTTTCAGCAAGCTATAGAGTATCACAATCAATCTCTAAGTATTGCAAAAGAAGTGGAGGACAGAGCTGGGGAAGGAAGAGCCTATTGCAATCTCGGCAGCACTTATCACAATATGGGCAATTTTAAGCAAGCCACTGAGTACCATTATGAAGATCTTAGTATTGCAAAAGAAGTAGGGGACAGGGCCAGAGAAGGAAAAGCCTATGGCAATCTCGGCAATGTTTATTGCAATTTGGGCAATTTTAAGCAAGGTATAGAGTTTTACAATCAATGTCTTAGTATTGCAAAAGAAGTGGAGGACAGAGATGGAGAAGGAAAAGCCTATTGCTATCTCGGCAATGCTTATTACAGTCTAAGCAATTTTAAGCAAGCCATAGAGTACCACAGTCAAGATCTTAGTATTGCAAAAGAAGTGGAGGACAGGGCTGGGGAAGGAAGAGCCTATTGCAATCTCGGCAGCACTTATCACAGTATGGGAAATTTTAAGCAAGCAATAGAGTACCATAATCAATATCTTAATATTGCAAAAGAAGTAGGGGACAGGGTCAGAGAAGGAAAAGCCTACGGCAATCTCGCCATTGCGTATGACAGTCTGGGCAATTTTAAGCAAGCCATAGAGTGCAACAATCAACATCTTAGTATTCTGAAAGAAGTAGGGGACAGGGCCCGAGAAGGAAGAACCTATGGCAATCTCGGCAATGTTCATTGCAGTCTGGGTAACTTTAAGCAAGCTATAGAGCTTTACAATGAATGTCTTAGTATTGCAAAAGAAGTGGAGGACAGAACTGGAGAAGGAAAAGCCTATTGCTCTCTCGGCAATGCTTATTACAGTCTAGGCAATTTTAAGCAAGCCATAGAGTATCACAATCAAGATCTTAGTATTGCAAAAGAGGTAGGGGACAGAGCCAGAGAAGGGGGAAACTATGGCAATCTCGGCTGCGATTTTTGCAGTCTGGGCAATGTAAAGCAAGCCATAGAGTACCAAAAACAATGTCTTAGCATTGCGAAAGAACTAGGGGACAGGGCCGCAGAAGGAAGAGCCTATGGCAATCTTGGCAATGCTTATTCCAGTCTGGGCAATCTTAAGGAAGCCATAGAGTTTCACAATCAATCTCTAAGTATTGCAAAAGAAGTGGTGGACCGAGCTAGAGAAGGAAATGTGTATGGCAATCTTGGCATTGCTTATTGCAGTCTGGGCAATTTTAAGCAAGCCATAGAGTACCACAAACAACGTCTTAGTATTGCAAAAGAAGTAGGGAACAGGGCCGGAGAAGGAAACGCGTATGGCAATCTCGGCAACGCTTATTACAGTCTGGGCAATTTGAAGCAAGCCATACAGTTCCACAAAGAATGTCTTTGTATTGTGAGAGAAGTAGGGGACAGGGACGGAGAAGGAAGAGCCTATGGCAATCTTGGCAATGCTTATACCAGTCTGGGCAATTTTGAGCAAGGTAGAGCGTACCACAATCAGTATCTTAGTATTATGAAAGAAGTAGGGGACAGGTCTGGGGAAGGAAAAGCCTATCGTAATCTTGCCGTTGATTATTACAATATGGGTGAGCTTCAAAATGCGCTTCTCTTTAATGAACACAGCTTTAGGATTTCCAAGGAAACGAAAGATCCAATAGGGCAGGGAAAGGCGTGTTATCAGCTCGGTCGTGTTCATGAAGTTTCAGACTCCTTGATCAAAGCTCTTAATTACCATCGGCTGAGCATAAATTATTATGATGAAACAAGGCGCCTTCTTCAGTCAGAGGATGCATGGAAAATAAGCTTTCGTGACACAAATAAGTTTGCGTATACTGCTCTGTGGACAGCACTCTTGAAGAATGGAGAGGTTGATGAGGCCTTGTGTGCTGCTGAGCAAGGCAGAGCGCAGGCTTTGGCAGACATTTTGAAGATGCGATACAGCGTTGATGAGAAACCTCCTTTGGGAGTTACAATGAAAGAAACTATCTCTTTTGTAATGAAAGATCTACCGTCTCAAACTGTTTTCACTGCACTTGCAGGGAACAAGATCAGCTTCTGGTTTCTACGAGAAGATGGCGGGTTAAATTTTAGAGTAAAGGAAATCGAAAATGGTAGTGCTGACTTACTGATGAAAAGTACTTTGAAACAGATCAGTGTGGGGACCGTTGTACGATGTGAGAATCGTTCGCTTGACAAACAATGCAGCAACTTCTCATGTTGTGCGGACGCGGTTGAGGAAACCGTTCAGTCCTTGAGCCTCTCTGTGAACTCTTTGCAGCCCTTGTATGATGTCTTAGTCAGTCCTATTGCAGACTTGCTGCAGGGTGATGACTTAGTCTTTGTTCCTGATGGACCCTTTTGCCTGGCTCCTTTTTCTGCATTGAGTGACTCTGTCAGGATCCGTGTAATTCCCTCGTTGACCGCTTTAAAAGTGATCACTAGTGCACCTGACGACTTTCAAAGTAAAAATAAAGCGCTGCTTGTAGGTGATCCGTGCTTGAAGGAAGTCACTTACGGCACTGGTGAACCCATGTATGAACAGCTGCCATGCGCGAAAGAAGAGGTGGAGATGATTGGAAAACTCCTGCAGACCTCGACTCTCACTGGCAGAAATGCAACGAAAGCTGAGGTGTTGAAAAGAATGACGTCAGTTGCGTTAATCCACATCGCTGCTCATGGAGATGACAAATTTGGAGAAATTGCTTTGGCCCCAAATCCCAAACGCACATCCCAGATCCCTGAAAAGGAAGATTACTTGCTAGCATTGAGCGATGTTTACGCAGTTCGTCTTCAGGCAAGACTGGTTGTACTGAGTTGCTGTCATAGTGGCCAGGGAGAGTTAAAATCAGAGGGTGTTGTGGCAATAGCCAGGGCTTTCCTGTGTGCTGGCGCCCGGTCTGTTCTGGTGTCACTCTGGGCAATTGATGACAAGGCGACATTGATGTTCATGAAATCTCTCTACCAACACTTGGCAGATAGAAAAAGTGCAAGTATAGCTCTTCACCATGCTATGAAATCTCTTCGGGAGACAAAGGATTATTCCACCATAAAATACTGGGCTCCATTTGTGCTAATTGGCGATGATGTCACCTTGGGGGAACACGAACACGAAAAGAATGAAAACCACACGAACCAGAGAACCACGAGAACTACAAGAACCAGAGAACCACGAGAACTAAAGAACCAGAGAACTAAAATAACCAGAGAACCACAAGAACCAAAGAATTAG

Transcript

rna-XM_068835136.1

gctttccatcgACCTCGAGTTTGAATGTACAAATGttccgtgggaaccaaagatgctgattggtGCACCCCAAATTTCTGAGAAAACCTTCCCGGTTCTGAATATCAAAAATGGTGGATAGGAAGTTGGGCAATTTGGAGCGGAACATACAAGAGCTTAGCATTGCAAGAAAAGAGGGAAACAGACGAAGGAAGGGTTTGGCTTGTTTCAATCTGGGAAAGTACTATCATGGCATAGCAGACTTTAAACAGGCCATAAAAAATTATGCAGAAGCATTAACCACTTTTAAGGAATTGGGTTTAAGGCCCGAAGAAGGAAAAGCCTCTTgtaatctcggcaatgcttataacagtctgggcaattttaagcaagccatagagtattacaatcaagatcttagtattgcaaaagaagtaaagGACAGGGCTCGggaaggaagagcctattgcaatctcggcagcACTTATCACAGTATGGGCAaatttaagcaagccatagagtaccataaTCAAGGTCTTAGTATTgaaaaagaagtaggggatagggccagagaaggaaaagcctatggaaatctcgccAATGCTTATtgcagtctgggcaattttcaGCAAGCTATAGAGTATCACAATCAATCTCtaagtattgcaaaagaagtggaGGACAGAGCTGGggaaggaagagcctattgcaatctcggcagcACTTATCACAAtatgggcaattttaagcaagccactGAGTACCATTAtgaagatcttagtattgcaaaagaagtaggggacagggccagagaaggaaaagcctatggcaatctcggcaatgttTATTGCAatttgggcaattttaagcaaggTATAGAGTTTTACAatcaatgtcttagtattgcaaaagaagtggaGGACAGAGAtggagaaggaaaagcctattgctatctcggcaatgcttattaCAGTCTAagcaattttaagcaagccatagagtaccacagtcaagatcttagtattgcaaaagaagtggaGGACAGGGCTGGggaaggaagagcctattgcaatctcggcagcACTTATCACAGTATgggaaattttaagcaagcaaTAGAGTACCATAATCAATATCTtaatattgcaaaagaagtaggggacagggtcagagaaggaaaagcctaCGGCAATCTCGCCATTGCGTAtgacagtctgggcaattttaagcaagccatagagtgcaacaatcaacatcttagtattctgaaagaagtaggggacagggcccGAGAAGGAAGaacctatggcaatctcggcaatgttCATTGCAGTCTGGGTAACTTTAAGCAAGCTATAGAGCTTTACAATgaatgtcttagtattgcaaaagaagtggaGGACAGAActggagaaggaaaagcctattgctctctcggcaatgcttattaCAGTCTaggcaattttaagcaagccatagagtatcacaatcaagatcttagtattgcaaaagaggtaggggacagagCCAGAGAAGGGGGAaactatggcaatctcggctgCGATTTTTGCAGTCTGGGCAATGtaaagcaagccatagagtaccaaaAACAATGTCTTAGCATTGCGAAAGAACTAGGGGACAGGGCCgcagaaggaagagcctatggcaatcttggcaatGCTTATTCCAGTCTGGGCAATCTTAAGGAAGCCATAGAGTTTCACAATCAATCTCtaagtattgcaaaagaagtggtGGACCGAGCTAGAGAAGGAAATGTGTATGGCAATCTTGGCATTGCTTATtgcagtctgggcaattttaagcaagccatagagtaccacaaacaacgtcttagtattgcaaaagaagtagggaacagggccggagaaggaaacgcgtatggcaatctcggcaacgcttattacagtctgggcaatttgaAGCAAGCCATACAGTTCCACAAAGAATGTCTTTGTATTGTGAGAGAAGTAGGGGACAGGgacggagaaggaagagcctatggcaatcttggcaatGCTTATaccagtctgggcaattttgaGCAAGGTAGAGCGTACCACAATCAGTATCTTAGTATTATgaaagaagtaggggacaggTCTGGGGAAGGAAAAGCCTATCGTAATCTTGCCGTTGATTATTACAATATGGGTGAGCTTCAAAATGCGCTTCTCTTTAATGAACACAGCTTTAGGATTTCCAAGGAAACGAAAGATCCAATAGGGCAGGGAAAGGCGTGTTATCAGCTCGGTCGTGTTCATGAAGTTTCAGACTCCTTGATCAAAGCTCTTAATTACCATCGGCTGAGCATAAATTATTATGATGAAACAAGGCGCCTTCTTCAGTCAgaggatgcatggaaaataagctttcgtgacaCAAATAAGTTTGCGTATACTGCTCTGTGGACAGCactcttgaagaatggagaggttgatgagGCCTTGTGTGCTGCTGAGCAAGGCAGAGCGCAGGCTTTGGCAGACATTTTGAAGATGCGATACAGCGTTGATGAGAAACCTCCTTTGGGAGTTACAATGAAAGAAACTATCTCTTTTGTAATGAAAGATCTACCGTCTCAAACTGTTTTCACTGCACTTGCAGGGAACAAGATCAGCTTCTGGTTTCTACGAGAAGATGGCGGGTTAAATTTTAGAGTAAAGGAAATCGAAAATGGTAGTGCTGACTTACTGATGAAAAGTACTTTGAAACAGATCAGTGTGGGGACCGTTGTACGATGTGAGAATCGTTCGCTTGACAAACAATGCAGCAACTTCTCATGTTGTGCGGACGCGGTTGAGGAAACCGTTCAGTCCTTGAGCCTCTCTGTGAACTCTTTGCAGcccttgtatgatgtcttagtcAGTCCTATTGCAGACTTGCTGCAGGGTGATGACTTAgtctttgttcctgatggacccttttgcctggctcctttttctgcattgagtgactctgtcaggatccgtgTAATTCCCTCGTTGACCGCTTTAAAAGTGATCACTAGTGCACCTGACGACtttcaaagtaaaaataaaGCGCTGCTTGTAGGTGATCCGTGCTTGAAGGAAGTCACTTACGGCACTGGTGAACCCATGTATGAACAGCTGCCATGCGCGAAAGAAGAGGTGGAGATGATTGGAAAACTCCTGCAGACCTCGACTCTCACTGGCAGAAATGCAACGAAAGCTGAGGTGTTGAAAAGAATGACGTCAGTTGCGTTAATCCACATCGCTGCTCATGGAGATGACAAatttggagaaattgctttggccccaaatcccAAACGCACATCCCAGATCCCTGAAAAGGAAGATTACTTGCTAGCATTGAGCGATGTTTACGCAGTTCGTcttcaggcaagactggttgtactgagttgctgtcatagtggccaGGGAGAGTTAAAATCAGAGGGTGTTGTGGCaatagccagggctttcctgtgtgctggcgcccggtctgttctggtgtcactctgggcaattgatgacAAGGCGACATTGATGTTCATGAAATCTCTCtaccaacacttggcagatagaaaaagtgcaagtatagctcttcaccatgctatgaaatctcttcggGAGACAAAGGATTATTCCACCATAAAATACTGGGCTCCATTTGTgctaattggcgatgatgtcaccttGGGGGAACACGAAcacgaaaagaatgaaaaccACACGAACCAGAGAACCACGAGAACTACAAGAACCAGAGAACCACGAGAACTAAAGAACCAGAGAACTAAAATAACCAGAGAACCACAAGAACCAAAGAATTAGGGAACCAAGGAACTAACGGGACAACGATTTATATTTATGACATTAGCTGTGGCTATTACACCGGAGATCAGCCGGAAAATTCACTTTCCCTCGATCGAGTGCAGCGATGGACGCCTTCGAACTTCTCGTATGGCTAATTTGCTGCACTCTTCTATAACTAATCGAAGGCAATGGTTTCTTCTGAACAGAAAGATTTGCGGCGCCCTTAGTGTTGGAAAACGTATGTCAAGGAGCCCTTTGGTagcaaatttatttatttatttatttatttacttagtaACTTCCATTTAGTGAAAATgacataacaacaaaaaaaaaaaagaaaaagaaaaaaggcacTAAATTAGGGACTAACGTACTGACTCGAAGTCCCACTGAGGTCAGCCTCCATAAATATATACTTATACTAAAACATACGTAAACAAAATCTAATAATTAACAACAGTTCATTCTATTAATTGAGCGACAATGAGGGCAGACTGTTTTCCATGTTTGAGTTCTAGAAGTGTCAAAAATTAGCGATAAACTTGTTTAAAGAAGTAGTTAAATAGACGGTCTATAAAGGTAGAGAGAGCTTTAGTTTCACATATATCTAACGAAATATTGTGGAACAATGCGATTGAAAAATGAGTCACGAAATAAGGAATTCCGGACACGATTAGGTCGTAAATTAGAGTCGTCGGCATTCCTAGTACGACCAGTTATTATATTGGTATAATGTTCCCGAGGGTTTCCAATCTCCTTAAACACTGAATTTGGAACATTTTTTGCCAAGGTTTTTGTCGAGTTACCAAAACAATAACTTAAAGCAACTGTTGTTCAAAAGTATTGATTGCCAGTGTTACAAACAACTCTATTTTGATTTGTTCACAGTGGAACTACGTAACGTTGATTTGTTAAAGGGTATACGACAATTTGACCAAACACATCCTGCCATTTTTGTAATTGTGAAGGCCTGGCAAGACGAGGAATTATGTTTCCAGAAACATGCGTAGCGTGCATGAAACCTTTACTCTATACagaggccctgttaggggggGGGTGCCCATGTCGTCCGTCTGAATTTCACAGCTAGCTATGTCGTAATTTCGGAACATTCTTGTGTCGCCTGTCGgaatttcattaataaattttagcTCGTTGCCCCTCTGACAATCCCCATTCGCTGGAACGACGTCAACGGAACATACGGCCTCTATCTTTAATACTTTTAAGCCCAGAGTTTTGAgaccttttttaatgtttaatacCTATTCAGACTACTTAGAAtagttgttgaagtcaatgaaattccatCTACTATACAAGTGAATAAAGGCCTAATCTGGCAAAGCAATCGAGTTATAATAGCGGTTCTACAATTACAATAcgatacaatacatacttaattgaccgctccccacaggggcttttcagggccaatgaaacacaacgaaacgaaacaacaacaactgtta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AY4	Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
Q80XJ3	Tetratricopeptide repeat protein 28 OS=Mus musculus OX=10090 GN=Ttc28 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0233363 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan
PF12862 all species →	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan
IPR026000 all species →	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.